Experiment: library passed through aphids in food, 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4752 and Psyr_4753 overlap by 4 nucleotides Psyr_4753 and Psyr_4754 overlap by 1 nucleotides Psyr_4754 and Psyr_4755 are separated by 267 nucleotides
Psyr_4752: Psyr_4752 - Insulinase-like:Peptidase M16, C-terminal, at 5,628,208 to 5,629,560
_4752
Psyr_4753: Psyr_4753 - Insulinase-like:Peptidase M16, C-terminal, at 5,629,557 to 5,631,047
_4753
Psyr_4754: Psyr_4754 - 16S rRNA m(2)G-966 methyltransferase, at 5,631,047 to 5,631,637
_4754
Psyr_4755: Psyr_4755 - hydrolase, alpha/beta fold family, at 5,631,905 to 5,632,939
_4755
Position (kb) 5629
5630
5631
5632 Strain fitness (log2 ratio) -2
-1
0
1 at 5628.558 kb on - strand, within Psyr_4752 at 5629.021 kb on + strand, within Psyr_4752 at 5629.021 kb on + strand, within Psyr_4752 at 5629.021 kb on + strand, within Psyr_4752 at 5629.021 kb on + strand, within Psyr_4752 at 5629.022 kb on - strand, within Psyr_4752 at 5629.022 kb on - strand, within Psyr_4752 at 5629.035 kb on - strand, within Psyr_4752 at 5629.112 kb on - strand, within Psyr_4752 at 5629.177 kb on + strand, within Psyr_4752 at 5629.360 kb on + strand, within Psyr_4752 at 5629.360 kb on + strand, within Psyr_4752 at 5629.360 kb on + strand, within Psyr_4752 at 5629.361 kb on - strand, within Psyr_4752 at 5629.361 kb on - strand, within Psyr_4752 at 5629.361 kb on - strand, within Psyr_4752 at 5629.501 kb on + strand at 5629.501 kb on + strand at 5629.501 kb on + strand at 5629.501 kb on + strand at 5629.501 kb on + strand at 5629.502 kb on - strand at 5629.502 kb on - strand at 5630.508 kb on + strand, within Psyr_4753 at 5630.509 kb on - strand, within Psyr_4753 at 5630.601 kb on + strand, within Psyr_4753 at 5630.601 kb on + strand, within Psyr_4753 at 5630.601 kb on + strand, within Psyr_4753 at 5630.601 kb on + strand, within Psyr_4753 at 5630.601 kb on + strand, within Psyr_4753 at 5630.602 kb on - strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.844 kb on + strand, within Psyr_4753 at 5630.845 kb on - strand, within Psyr_4753 at 5630.845 kb on - strand, within Psyr_4753 at 5630.862 kb on + strand, within Psyr_4753 at 5630.862 kb on + strand, within Psyr_4753 at 5630.862 kb on + strand, within Psyr_4753 at 5630.863 kb on - strand, within Psyr_4753 at 5630.863 kb on - strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.874 kb on + strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5630.875 kb on - strand, within Psyr_4753 at 5630.972 kb on + strand at 5631.094 kb on + strand at 5631.204 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.608 kb on + strand at 5631.647 kb on + strand at 5631.647 kb on + strand at 5631.647 kb on + strand at 5631.648 kb on - strand at 5631.648 kb on - strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.744 kb on - strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours remove 5,628,558 - Psyr_4752 0.26 +0.5 5,629,021 + Psyr_4752 0.60 +0.4 5,629,021 + Psyr_4752 0.60 +0.0 5,629,021 + Psyr_4752 0.60 +0.4 5,629,021 + Psyr_4752 0.60 -0.6 5,629,022 - Psyr_4752 0.60 +0.2 5,629,022 - Psyr_4752 0.60 -1.9 5,629,035 - Psyr_4752 0.61 -0.4 5,629,112 - Psyr_4752 0.67 -0.9 5,629,177 + Psyr_4752 0.72 -1.1 5,629,360 + Psyr_4752 0.85 +0.1 5,629,360 + Psyr_4752 0.85 -0.6 5,629,360 + Psyr_4752 0.85 -0.1 5,629,361 - Psyr_4752 0.85 -1.1 5,629,361 - Psyr_4752 0.85 +0.2 5,629,361 - Psyr_4752 0.85 -0.5 5,629,501 + +0.7 5,629,501 + -1.1 5,629,501 + -0.6 5,629,501 + -0.4 5,629,501 + +0.3 5,629,502 - -0.5 5,629,502 - -2.1 5,630,508 + Psyr_4753 0.64 +0.4 5,630,509 - Psyr_4753 0.64 +0.2 5,630,601 + Psyr_4753 0.70 +0.1 5,630,601 + Psyr_4753 0.70 -0.1 5,630,601 + Psyr_4753 0.70 -1.0 5,630,601 + Psyr_4753 0.70 -0.7 5,630,601 + Psyr_4753 0.70 -0.2 5,630,602 - Psyr_4753 0.70 -1.4 5,630,844 + Psyr_4753 0.86 +0.2 5,630,844 + Psyr_4753 0.86 +0.1 5,630,844 + Psyr_4753 0.86 +0.7 5,630,844 + Psyr_4753 0.86 -0.7 5,630,844 + Psyr_4753 0.86 -0.6 5,630,845 - Psyr_4753 0.86 -1.0 5,630,845 - Psyr_4753 0.86 -0.5 5,630,862 + Psyr_4753 0.88 -1.1 5,630,862 + Psyr_4753 0.88 +0.1 5,630,862 + Psyr_4753 0.88 -0.9 5,630,863 - Psyr_4753 0.88 -1.3 5,630,863 - Psyr_4753 0.88 -0.2 5,630,874 + Psyr_4753 0.88 +0.4 5,630,874 + Psyr_4753 0.88 -0.2 5,630,874 + Psyr_4753 0.88 +1.1 5,630,874 + Psyr_4753 0.88 +0.1 5,630,874 + Psyr_4753 0.88 +0.2 5,630,874 + Psyr_4753 0.88 -0.2 5,630,874 + Psyr_4753 0.88 -0.9 5,630,874 + Psyr_4753 0.88 +0.6 5,630,874 + Psyr_4753 0.88 -0.6 5,630,874 + Psyr_4753 0.88 -0.2 5,630,874 + Psyr_4753 0.88 +0.6 5,630,875 - Psyr_4753 0.88 +0.0 5,630,875 - Psyr_4753 0.88 +0.4 5,630,875 - Psyr_4753 0.88 -1.8 5,630,875 - Psyr_4753 0.88 +0.2 5,630,875 - Psyr_4753 0.88 -1.2 5,630,972 + -0.5 5,631,094 + -1.3 5,631,204 - Psyr_4754 0.27 -2.5 5,631,522 - Psyr_4754 0.80 -1.8 5,631,522 - Psyr_4754 0.80 -1.2 5,631,522 - Psyr_4754 0.80 -0.9 5,631,605 + -1.3 5,631,605 + +0.3 5,631,605 + -0.1 5,631,605 + -1.3 5,631,605 + +0.7 5,631,606 - -0.2 5,631,606 - -1.0 5,631,606 - +1.0 5,631,608 + +0.2 5,631,647 + -0.6 5,631,647 + -0.8 5,631,647 + +0.1 5,631,648 - +1.3 5,631,648 - -2.3 5,631,739 + -0.1 5,631,739 + -0.2 5,631,739 + -0.0 5,631,739 + -1.0 5,631,739 + +0.3 5,631,739 + -0.4 5,631,740 - +0.2 5,631,740 - +0.6 5,631,740 - -0.3 5,631,740 - -0.7 5,631,743 + -0.8 5,631,743 + -0.8 5,631,743 + -0.6 5,631,744 - -0.3 5,631,818 + -0.6 5,631,818 + -0.2 5,631,818 + -0.3 5,631,818 + -0.1 5,631,818 + -0.0 5,631,818 + +0.2 5,631,818 + +1.4 5,631,819 - +0.5 5,631,819 - -1.1 5,631,819 - +1.1 5,631,819 - -0.7 5,631,819 - +0.4 5,631,839 + +1.6 5,631,839 + +0.7 5,631,839 + +0.9 5,631,839 + -0.3 5,631,839 + +0.8 5,631,839 + +0.4 5,631,840 - -0.2 5,631,840 - -0.8 5,631,840 - -0.6 5,631,840 - -0.2 5,631,840 - +0.2 5,631,840 - -1.2 5,631,840 - -0.2 5,631,840 - -1.9 5,631,855 + +0.7 5,631,855 + -0.6 5,631,855 + +0.3 5,631,866 + -0.2 5,631,866 + -0.2 5,631,866 + +0.6 5,631,866 + +1.3 5,631,866 + -0.2 5,631,866 + -0.5 5,631,866 + +1.1 5,631,866 + -0.5 5,631,866 + -0.8 5,631,866 + -0.2 5,631,866 + +0.2 5,631,866 + -0.9 5,631,866 + -0.9 5,631,866 + -0.7 5,631,867 - -0.2 5,631,867 - -0.0 5,631,867 - -0.2 5,631,867 - -0.5 5,631,867 - -0.4 5,631,867 - +0.5 5,631,867 - +0.0 5,631,867 - +0.2 5,631,867 - -0.2 5,631,867 - +0.7 5,631,867 - +0.9 5,631,920 - +0.8
Or see this region's nucleotide sequence