Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4434

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4433 and Pf6N2E2_4434 are separated by 396 nucleotidesPf6N2E2_4434 and Pf6N2E2_4435 are separated by 174 nucleotidesPf6N2E2_4435 and Pf6N2E2_4436 are separated by 59 nucleotides Pf6N2E2_4433 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 5,165,206 to 5,166,453 _4433 Pf6N2E2_4434 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 5,166,850 to 5,167,392 _4434 Pf6N2E2_4435 - Regulator of sigma D, at 5,167,567 to 5,168,025 _4435 Pf6N2E2_4436 - Macrophage infectivity potentiator, at 5,168,085 to 5,168,750 _4436 Position (kb) 5166 5167 5168Strain fitness (log2 ratio) -2 -1 0 1 2at 5166.028 kb on + strand, within Pf6N2E2_4433at 5166.028 kb on + strand, within Pf6N2E2_4433at 5166.028 kb on + strand, within Pf6N2E2_4433at 5166.029 kb on - strand, within Pf6N2E2_4433at 5166.077 kb on + strand, within Pf6N2E2_4433at 5166.077 kb on + strand, within Pf6N2E2_4433at 5166.078 kb on - strand, within Pf6N2E2_4433at 5166.103 kb on + strand, within Pf6N2E2_4433at 5166.103 kb on + strand, within Pf6N2E2_4433at 5166.104 kb on - strand, within Pf6N2E2_4433at 5166.127 kb on + strand, within Pf6N2E2_4433at 5166.271 kb on + strand, within Pf6N2E2_4433at 5166.482 kb on + strandat 5166.482 kb on + strandat 5166.482 kb on + strandat 5166.483 kb on - strandat 5166.483 kb on - strandat 5166.483 kb on - strandat 5166.508 kb on - strandat 5166.508 kb on - strandat 5166.537 kb on + strandat 5166.537 kb on + strandat 5166.537 kb on + strandat 5166.537 kb on + strandat 5166.537 kb on + strandat 5166.538 kb on - strandat 5166.538 kb on - strandat 5166.564 kb on - strandat 5166.588 kb on - strandat 5166.614 kb on + strandat 5166.615 kb on - strandat 5166.703 kb on - strandat 5166.711 kb on - strandat 5166.728 kb on - strandat 5166.755 kb on + strandat 5166.755 kb on + strandat 5166.756 kb on - strandat 5166.756 kb on - strandat 5166.818 kb on + strandat 5166.839 kb on - strandat 5166.839 kb on - strandat 5166.925 kb on + strand, within Pf6N2E2_4434at 5166.925 kb on + strand, within Pf6N2E2_4434at 5166.925 kb on + strand, within Pf6N2E2_4434at 5166.934 kb on + strand, within Pf6N2E2_4434at 5166.934 kb on + strand, within Pf6N2E2_4434at 5166.998 kb on + strand, within Pf6N2E2_4434at 5166.998 kb on + strand, within Pf6N2E2_4434at 5166.998 kb on + strand, within Pf6N2E2_4434at 5166.998 kb on + strand, within Pf6N2E2_4434at 5166.998 kb on + strand, within Pf6N2E2_4434at 5166.998 kb on + strand, within Pf6N2E2_4434at 5166.999 kb on - strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.022 kb on + strand, within Pf6N2E2_4434at 5167.023 kb on - strand, within Pf6N2E2_4434at 5167.023 kb on - strand, within Pf6N2E2_4434at 5167.054 kb on + strand, within Pf6N2E2_4434at 5167.054 kb on + strand, within Pf6N2E2_4434at 5167.054 kb on + strand, within Pf6N2E2_4434at 5167.054 kb on + strand, within Pf6N2E2_4434at 5167.054 kb on + strand, within Pf6N2E2_4434at 5167.055 kb on - strand, within Pf6N2E2_4434at 5167.055 kb on - strand, within Pf6N2E2_4434at 5167.055 kb on - strand, within Pf6N2E2_4434at 5167.230 kb on + strand, within Pf6N2E2_4434at 5167.231 kb on - strand, within Pf6N2E2_4434at 5167.257 kb on + strand, within Pf6N2E2_4434at 5167.309 kb on + strand, within Pf6N2E2_4434at 5167.309 kb on + strand, within Pf6N2E2_4434at 5167.310 kb on - strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.313 kb on + strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.314 kb on - strand, within Pf6N2E2_4434at 5167.363 kb on - strandat 5167.400 kb on + strandat 5167.400 kb on + strandat 5167.400 kb on + strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.401 kb on - strandat 5167.409 kb on + strandat 5167.410 kb on - strandat 5167.410 kb on - strandat 5167.420 kb on + strandat 5167.420 kb on + strandat 5167.421 kb on - strandat 5167.447 kb on + strandat 5167.447 kb on + strandat 5167.664 kb on - strand, within Pf6N2E2_4435at 5167.681 kb on - strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.744 kb on + strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.745 kb on - strand, within Pf6N2E2_4435at 5167.769 kb on + strand, within Pf6N2E2_4435at 5167.769 kb on + strand, within Pf6N2E2_4435at 5167.769 kb on + strand, within Pf6N2E2_4435at 5167.770 kb on - strand, within Pf6N2E2_4435at 5167.770 kb on - strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.771 kb on + strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.772 kb on - strand, within Pf6N2E2_4435at 5167.840 kb on + strand, within Pf6N2E2_4435at 5167.841 kb on - strand, within Pf6N2E2_4435at 5168.167 kb on + strand, within Pf6N2E2_4436at 5168.167 kb on + strand, within Pf6N2E2_4436at 5168.319 kb on - strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.320 kb on + strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436at 5168.321 kb on - strand, within Pf6N2E2_4436

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
5,166,028 + Pf6N2E2_4433 0.66 -1.3
5,166,028 + Pf6N2E2_4433 0.66 -1.3
5,166,028 + Pf6N2E2_4433 0.66 -0.1
5,166,029 - Pf6N2E2_4433 0.66 -0.3
5,166,077 + Pf6N2E2_4433 0.70 -0.3
5,166,077 + Pf6N2E2_4433 0.70 -0.7
5,166,078 - Pf6N2E2_4433 0.70 -1.4
5,166,103 + Pf6N2E2_4433 0.72 -0.1
5,166,103 + Pf6N2E2_4433 0.72 +0.7
5,166,104 - Pf6N2E2_4433 0.72 +0.4
5,166,127 + Pf6N2E2_4433 0.74 -0.5
5,166,271 + Pf6N2E2_4433 0.85 +0.3
5,166,482 + -0.5
5,166,482 + -0.0
5,166,482 + +0.2
5,166,483 - +0.8
5,166,483 - -0.8
5,166,483 - -0.3
5,166,508 - -0.2
5,166,508 - +0.1
5,166,537 + +0.4
5,166,537 + -1.2
5,166,537 + +0.5
5,166,537 + +1.1
5,166,537 + +0.9
5,166,538 - +0.2
5,166,538 - +1.0
5,166,564 - -0.1
5,166,588 - -0.1
5,166,614 + +0.2
5,166,615 - -0.2
5,166,703 - +0.6
5,166,711 - -0.8
5,166,728 - +1.0
5,166,755 + +0.5
5,166,755 + -0.7
5,166,756 - -1.3
5,166,756 - +0.2
5,166,818 + -1.2
5,166,839 - +0.4
5,166,839 - -0.2
5,166,925 + Pf6N2E2_4434 0.14 +0.8
5,166,925 + Pf6N2E2_4434 0.14 +0.4
5,166,925 + Pf6N2E2_4434 0.14 -0.3
5,166,934 + Pf6N2E2_4434 0.15 +0.3
5,166,934 + Pf6N2E2_4434 0.15 -0.8
5,166,998 + Pf6N2E2_4434 0.27 -0.2
5,166,998 + Pf6N2E2_4434 0.27 -2.0
5,166,998 + Pf6N2E2_4434 0.27 +0.7
5,166,998 + Pf6N2E2_4434 0.27 +0.9
5,166,998 + Pf6N2E2_4434 0.27 -0.6
5,166,998 + Pf6N2E2_4434 0.27 -0.1
5,166,999 - Pf6N2E2_4434 0.27 -0.1
5,167,022 + Pf6N2E2_4434 0.32 -0.6
5,167,022 + Pf6N2E2_4434 0.32 +0.1
5,167,022 + Pf6N2E2_4434 0.32 -0.2
5,167,022 + Pf6N2E2_4434 0.32 -1.3
5,167,022 + Pf6N2E2_4434 0.32 +0.1
5,167,022 + Pf6N2E2_4434 0.32 +1.2
5,167,022 + Pf6N2E2_4434 0.32 +0.3
5,167,023 - Pf6N2E2_4434 0.32 +0.3
5,167,023 - Pf6N2E2_4434 0.32 -0.2
5,167,054 + Pf6N2E2_4434 0.38 +0.3
5,167,054 + Pf6N2E2_4434 0.38 +0.8
5,167,054 + Pf6N2E2_4434 0.38 +0.1
5,167,054 + Pf6N2E2_4434 0.38 -0.7
5,167,054 + Pf6N2E2_4434 0.38 +0.6
5,167,055 - Pf6N2E2_4434 0.38 -0.5
5,167,055 - Pf6N2E2_4434 0.38 -0.7
5,167,055 - Pf6N2E2_4434 0.38 -0.5
5,167,230 + Pf6N2E2_4434 0.70 +0.2
5,167,231 - Pf6N2E2_4434 0.70 -1.0
5,167,257 + Pf6N2E2_4434 0.75 -1.2
5,167,309 + Pf6N2E2_4434 0.85 -1.4
5,167,309 + Pf6N2E2_4434 0.85 +0.3
5,167,310 - Pf6N2E2_4434 0.85 +0.1
5,167,313 + Pf6N2E2_4434 0.85 -0.9
5,167,313 + Pf6N2E2_4434 0.85 +0.5
5,167,313 + Pf6N2E2_4434 0.85 -1.2
5,167,313 + Pf6N2E2_4434 0.85 +0.9
5,167,313 + Pf6N2E2_4434 0.85 -0.0
5,167,313 + Pf6N2E2_4434 0.85 -0.5
5,167,313 + Pf6N2E2_4434 0.85 +0.2
5,167,314 - Pf6N2E2_4434 0.85 -0.1
5,167,314 - Pf6N2E2_4434 0.85 +0.9
5,167,314 - Pf6N2E2_4434 0.85 -1.9
5,167,314 - Pf6N2E2_4434 0.85 -0.7
5,167,314 - Pf6N2E2_4434 0.85 -0.6
5,167,314 - Pf6N2E2_4434 0.85 -2.1
5,167,363 - -0.6
5,167,400 + -0.8
5,167,400 + +0.6
5,167,400 + -0.5
5,167,401 - -1.2
5,167,401 - +0.6
5,167,401 - +0.2
5,167,401 - -1.9
5,167,401 - -0.3
5,167,409 + +0.6
5,167,410 - +0.1
5,167,410 - -0.4
5,167,420 + +0.5
5,167,420 + +1.4
5,167,421 - +0.0
5,167,447 + +0.5
5,167,447 + -0.1
5,167,664 - Pf6N2E2_4435 0.21 +0.2
5,167,681 - Pf6N2E2_4435 0.25 +2.3
5,167,744 + Pf6N2E2_4435 0.39 -0.9
5,167,744 + Pf6N2E2_4435 0.39 -0.0
5,167,744 + Pf6N2E2_4435 0.39 +0.7
5,167,744 + Pf6N2E2_4435 0.39 +0.5
5,167,744 + Pf6N2E2_4435 0.39 -0.5
5,167,744 + Pf6N2E2_4435 0.39 -1.4
5,167,745 - Pf6N2E2_4435 0.39 +0.4
5,167,745 - Pf6N2E2_4435 0.39 +0.2
5,167,745 - Pf6N2E2_4435 0.39 +1.0
5,167,745 - Pf6N2E2_4435 0.39 -1.0
5,167,745 - Pf6N2E2_4435 0.39 +0.4
5,167,745 - Pf6N2E2_4435 0.39 +1.5
5,167,769 + Pf6N2E2_4435 0.44 -0.7
5,167,769 + Pf6N2E2_4435 0.44 +0.5
5,167,769 + Pf6N2E2_4435 0.44 -0.1
5,167,770 - Pf6N2E2_4435 0.44 +1.0
5,167,770 - Pf6N2E2_4435 0.44 +1.0
5,167,771 + Pf6N2E2_4435 0.44 +0.6
5,167,771 + Pf6N2E2_4435 0.44 +0.6
5,167,771 + Pf6N2E2_4435 0.44 -0.2
5,167,771 + Pf6N2E2_4435 0.44 -0.3
5,167,771 + Pf6N2E2_4435 0.44 -0.4
5,167,771 + Pf6N2E2_4435 0.44 +1.0
5,167,771 + Pf6N2E2_4435 0.44 -0.7
5,167,771 + Pf6N2E2_4435 0.44 +1.5
5,167,771 + Pf6N2E2_4435 0.44 +0.3
5,167,772 - Pf6N2E2_4435 0.45 -0.3
5,167,772 - Pf6N2E2_4435 0.45 +0.7
5,167,772 - Pf6N2E2_4435 0.45 -0.4
5,167,772 - Pf6N2E2_4435 0.45 -0.1
5,167,772 - Pf6N2E2_4435 0.45 +0.9
5,167,772 - Pf6N2E2_4435 0.45 +0.3
5,167,772 - Pf6N2E2_4435 0.45 -0.5
5,167,772 - Pf6N2E2_4435 0.45 +0.3
5,167,772 - Pf6N2E2_4435 0.45 +0.6
5,167,772 - Pf6N2E2_4435 0.45 +0.4
5,167,772 - Pf6N2E2_4435 0.45 +0.8
5,167,840 + Pf6N2E2_4435 0.59 +0.5
5,167,841 - Pf6N2E2_4435 0.60 +1.2
5,168,167 + Pf6N2E2_4436 0.12 +1.4
5,168,167 + Pf6N2E2_4436 0.12 +0.1
5,168,319 - Pf6N2E2_4436 0.35 +0.4
5,168,320 + Pf6N2E2_4436 0.35 -0.5
5,168,320 + Pf6N2E2_4436 0.35 +0.0
5,168,320 + Pf6N2E2_4436 0.35 +0.1
5,168,320 + Pf6N2E2_4436 0.35 +0.6
5,168,320 + Pf6N2E2_4436 0.35 +0.5
5,168,320 + Pf6N2E2_4436 0.35 +1.4
5,168,320 + Pf6N2E2_4436 0.35 -0.4
5,168,320 + Pf6N2E2_4436 0.35 -0.0
5,168,320 + Pf6N2E2_4436 0.35 -0.1
5,168,320 + Pf6N2E2_4436 0.35 +1.1
5,168,321 - Pf6N2E2_4436 0.35 +0.6
5,168,321 - Pf6N2E2_4436 0.35 +0.5
5,168,321 - Pf6N2E2_4436 0.35 -0.2
5,168,321 - Pf6N2E2_4436 0.35 +1.4
5,168,321 - Pf6N2E2_4436 0.35 -0.7

Or see this region's nucleotide sequence