Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1379 and Pf6N2E2_1380 overlap by 17 nucleotides Pf6N2E2_1380 and Pf6N2E2_1381 are separated by 458 nucleotides
Pf6N2E2_1379 - Sensory box histidine kinase/response regulator, at 1,617,576 to 1,618,946
_1379
Pf6N2E2_1380 - Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10), at 1,618,930 to 1,620,108
_1380
Pf6N2E2_1381 - Aldehyde dehydrogenase (EC 1.2.1.3), at 1,620,567 to 1,622,087
_1381
Position (kb)
1618
1619
1620
1621 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1618.083 kb on - strand, within Pf6N2E2_1379 at 1618.256 kb on + strand, within Pf6N2E2_1379 at 1618.273 kb on + strand, within Pf6N2E2_1379 at 1618.274 kb on - strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.563 kb on + strand, within Pf6N2E2_1379 at 1618.564 kb on - strand, within Pf6N2E2_1379 at 1618.645 kb on + strand, within Pf6N2E2_1379 at 1618.645 kb on + strand, within Pf6N2E2_1379 at 1619.205 kb on - strand, within Pf6N2E2_1380 at 1619.205 kb on - strand, within Pf6N2E2_1380 at 1620.097 kb on + strand at 1620.097 kb on + strand at 1620.098 kb on - strand at 1620.098 kb on - strand at 1620.113 kb on - strand at 1620.149 kb on - strand at 1620.236 kb on + strand at 1620.236 kb on + strand at 1620.236 kb on + strand at 1620.258 kb on + strand at 1620.259 kb on - strand at 1620.259 kb on - strand at 1620.259 kb on - strand at 1620.282 kb on + strand at 1620.334 kb on + strand at 1620.334 kb on + strand at 1620.365 kb on - strand at 1620.365 kb on - strand at 1620.365 kb on - strand at 1620.395 kb on + strand at 1620.396 kb on - strand at 1620.398 kb on + strand at 1620.398 kb on + strand at 1620.399 kb on - strand at 1620.493 kb on - strand at 1620.595 kb on + strand at 1620.596 kb on - strand at 1620.644 kb on + strand at 1620.644 kb on + strand at 1620.677 kb on - strand at 1620.937 kb on + strand, within Pf6N2E2_1381 at 1620.937 kb on + strand, within Pf6N2E2_1381 at 1620.937 kb on + strand, within Pf6N2E2_1381 at 1620.937 kb on + strand, within Pf6N2E2_1381 at 1620.937 kb on + strand, within Pf6N2E2_1381 at 1620.937 kb on + strand, within Pf6N2E2_1381 at 1620.937 kb on + strand at 1620.938 kb on - strand, within Pf6N2E2_1381 at 1620.938 kb on - strand, within Pf6N2E2_1381 at 1620.938 kb on - strand, within Pf6N2E2_1381 at 1620.938 kb on - strand, within Pf6N2E2_1381 at 1620.938 kb on - strand, within Pf6N2E2_1381 at 1620.938 kb on - strand, within Pf6N2E2_1381 at 1620.940 kb on + strand, within Pf6N2E2_1381 at 1620.941 kb on - strand, within Pf6N2E2_1381 at 1621.024 kb on + strand, within Pf6N2E2_1381 at 1621.025 kb on - strand, within Pf6N2E2_1381 at 1621.025 kb on - strand, within Pf6N2E2_1381
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 1,618,083 - Pf6N2E2_1379 0.37 +1.1 1,618,256 + Pf6N2E2_1379 0.50 -0.1 1,618,273 + Pf6N2E2_1379 0.51 -0.4 1,618,274 - Pf6N2E2_1379 0.51 +0.4 1,618,563 + Pf6N2E2_1379 0.72 +0.9 1,618,563 + Pf6N2E2_1379 0.72 +0.8 1,618,563 + Pf6N2E2_1379 0.72 +0.6 1,618,563 + Pf6N2E2_1379 0.72 -0.6 1,618,564 - Pf6N2E2_1379 0.72 +1.0 1,618,645 + Pf6N2E2_1379 0.78 +0.8 1,618,645 + Pf6N2E2_1379 0.78 +1.0 1,619,205 - Pf6N2E2_1380 0.23 +0.6 1,619,205 - Pf6N2E2_1380 0.23 +1.3 1,620,097 + +0.8 1,620,097 + +0.3 1,620,098 - +1.2 1,620,098 - +0.8 1,620,113 - +1.0 1,620,149 - +0.3 1,620,236 + +1.7 1,620,236 + +0.9 1,620,236 + +1.4 1,620,258 + +1.2 1,620,259 - +0.1 1,620,259 - +1.3 1,620,259 - +1.3 1,620,282 + +1.9 1,620,334 + +0.5 1,620,334 + +0.9 1,620,365 - +0.3 1,620,365 - -0.5 1,620,365 - -1.3 1,620,395 + +1.4 1,620,396 - +0.4 1,620,398 + -0.2 1,620,398 + -0.8 1,620,399 - +0.5 1,620,493 - -0.4 1,620,595 + -1.1 1,620,596 - -3.1 1,620,644 + -3.1 1,620,644 + -3.8 1,620,677 - -2.8 1,620,937 + Pf6N2E2_1381 0.24 -3.4 1,620,937 + Pf6N2E2_1381 0.24 -1.8 1,620,937 + Pf6N2E2_1381 0.24 -1.8 1,620,937 + Pf6N2E2_1381 0.24 -1.7 1,620,937 + Pf6N2E2_1381 0.24 -1.3 1,620,937 + Pf6N2E2_1381 0.24 +0.5 1,620,937 + +0.5 1,620,938 - Pf6N2E2_1381 0.24 -1.6 1,620,938 - Pf6N2E2_1381 0.24 -2.5 1,620,938 - Pf6N2E2_1381 0.24 -4.1 1,620,938 - Pf6N2E2_1381 0.24 -0.8 1,620,938 - Pf6N2E2_1381 0.24 -3.0 1,620,938 - Pf6N2E2_1381 0.24 -2.7 1,620,940 + Pf6N2E2_1381 0.25 -1.6 1,620,941 - Pf6N2E2_1381 0.25 -2.8 1,621,024 + Pf6N2E2_1381 0.30 -2.7 1,621,025 - Pf6N2E2_1381 0.30 -2.5 1,621,025 - Pf6N2E2_1381 0.30 -2.7
Or see this region's nucleotide sequence