Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1380

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1379 and Pf6N2E2_1380 overlap by 17 nucleotidesPf6N2E2_1380 and Pf6N2E2_1381 are separated by 458 nucleotides Pf6N2E2_1379 - Sensory box histidine kinase/response regulator, at 1,617,576 to 1,618,946 _1379 Pf6N2E2_1380 - Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10), at 1,618,930 to 1,620,108 _1380 Pf6N2E2_1381 - Aldehyde dehydrogenase (EC 1.2.1.3), at 1,620,567 to 1,622,087 _1381 Position (kb) 1618 1619 1620 1621Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1618.083 kb on - strand, within Pf6N2E2_1379at 1618.256 kb on + strand, within Pf6N2E2_1379at 1618.273 kb on + strand, within Pf6N2E2_1379at 1618.274 kb on - strand, within Pf6N2E2_1379at 1618.563 kb on + strand, within Pf6N2E2_1379at 1618.563 kb on + strand, within Pf6N2E2_1379at 1618.563 kb on + strand, within Pf6N2E2_1379at 1618.563 kb on + strand, within Pf6N2E2_1379at 1618.564 kb on - strand, within Pf6N2E2_1379at 1618.645 kb on + strand, within Pf6N2E2_1379at 1618.645 kb on + strand, within Pf6N2E2_1379at 1619.205 kb on - strand, within Pf6N2E2_1380at 1619.205 kb on - strand, within Pf6N2E2_1380at 1620.097 kb on + strandat 1620.097 kb on + strandat 1620.098 kb on - strandat 1620.098 kb on - strandat 1620.113 kb on - strandat 1620.149 kb on - strandat 1620.236 kb on + strandat 1620.236 kb on + strandat 1620.236 kb on + strandat 1620.258 kb on + strandat 1620.259 kb on - strandat 1620.259 kb on - strandat 1620.259 kb on - strandat 1620.282 kb on + strandat 1620.334 kb on + strandat 1620.334 kb on + strandat 1620.365 kb on - strandat 1620.365 kb on - strandat 1620.365 kb on - strandat 1620.395 kb on + strandat 1620.396 kb on - strandat 1620.398 kb on + strandat 1620.398 kb on + strandat 1620.399 kb on - strandat 1620.493 kb on - strandat 1620.595 kb on + strandat 1620.596 kb on - strandat 1620.644 kb on + strandat 1620.644 kb on + strandat 1620.677 kb on - strandat 1620.937 kb on + strand, within Pf6N2E2_1381at 1620.937 kb on + strand, within Pf6N2E2_1381at 1620.937 kb on + strand, within Pf6N2E2_1381at 1620.937 kb on + strand, within Pf6N2E2_1381at 1620.937 kb on + strand, within Pf6N2E2_1381at 1620.937 kb on + strand, within Pf6N2E2_1381at 1620.937 kb on + strandat 1620.938 kb on - strand, within Pf6N2E2_1381at 1620.938 kb on - strand, within Pf6N2E2_1381at 1620.938 kb on - strand, within Pf6N2E2_1381at 1620.938 kb on - strand, within Pf6N2E2_1381at 1620.938 kb on - strand, within Pf6N2E2_1381at 1620.938 kb on - strand, within Pf6N2E2_1381at 1620.940 kb on + strand, within Pf6N2E2_1381at 1620.941 kb on - strand, within Pf6N2E2_1381at 1621.024 kb on + strand, within Pf6N2E2_1381at 1621.025 kb on - strand, within Pf6N2E2_1381at 1621.025 kb on - strand, within Pf6N2E2_1381

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,618,083 - Pf6N2E2_1379 0.37 +1.1
1,618,256 + Pf6N2E2_1379 0.50 -0.1
1,618,273 + Pf6N2E2_1379 0.51 -0.4
1,618,274 - Pf6N2E2_1379 0.51 +0.4
1,618,563 + Pf6N2E2_1379 0.72 +0.9
1,618,563 + Pf6N2E2_1379 0.72 +0.8
1,618,563 + Pf6N2E2_1379 0.72 +0.6
1,618,563 + Pf6N2E2_1379 0.72 -0.6
1,618,564 - Pf6N2E2_1379 0.72 +1.0
1,618,645 + Pf6N2E2_1379 0.78 +0.8
1,618,645 + Pf6N2E2_1379 0.78 +1.0
1,619,205 - Pf6N2E2_1380 0.23 +0.6
1,619,205 - Pf6N2E2_1380 0.23 +1.3
1,620,097 + +0.8
1,620,097 + +0.3
1,620,098 - +1.2
1,620,098 - +0.8
1,620,113 - +1.0
1,620,149 - +0.3
1,620,236 + +1.7
1,620,236 + +0.9
1,620,236 + +1.4
1,620,258 + +1.2
1,620,259 - +0.1
1,620,259 - +1.3
1,620,259 - +1.3
1,620,282 + +1.9
1,620,334 + +0.5
1,620,334 + +0.9
1,620,365 - +0.3
1,620,365 - -0.5
1,620,365 - -1.3
1,620,395 + +1.4
1,620,396 - +0.4
1,620,398 + -0.2
1,620,398 + -0.8
1,620,399 - +0.5
1,620,493 - -0.4
1,620,595 + -1.1
1,620,596 - -3.1
1,620,644 + -3.1
1,620,644 + -3.8
1,620,677 - -2.8
1,620,937 + Pf6N2E2_1381 0.24 -3.4
1,620,937 + Pf6N2E2_1381 0.24 -1.8
1,620,937 + Pf6N2E2_1381 0.24 -1.8
1,620,937 + Pf6N2E2_1381 0.24 -1.7
1,620,937 + Pf6N2E2_1381 0.24 -1.3
1,620,937 + Pf6N2E2_1381 0.24 +0.5
1,620,937 + +0.5
1,620,938 - Pf6N2E2_1381 0.24 -1.6
1,620,938 - Pf6N2E2_1381 0.24 -2.5
1,620,938 - Pf6N2E2_1381 0.24 -4.1
1,620,938 - Pf6N2E2_1381 0.24 -0.8
1,620,938 - Pf6N2E2_1381 0.24 -3.0
1,620,938 - Pf6N2E2_1381 0.24 -2.7
1,620,940 + Pf6N2E2_1381 0.25 -1.6
1,620,941 - Pf6N2E2_1381 0.25 -2.8
1,621,024 + Pf6N2E2_1381 0.30 -2.7
1,621,025 - Pf6N2E2_1381 0.30 -2.5
1,621,025 - Pf6N2E2_1381 0.30 -2.7

Or see this region's nucleotide sequence