Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27335 and BWI76_RS27340 are separated by 0 nucleotides BWI76_RS27340 and BWI76_RS27345 overlap by 11 nucleotides BWI76_RS27345 and BWI76_RS27350 are separated by 4 nucleotides
BWI76_RS27335: BWI76_RS27335 - hypothetical protein, at 5,673,068 to 5,675,404
_RS27335
BWI76_RS27340: BWI76_RS27340 - hypothetical protein, at 5,675,405 to 5,676,778
_RS27340
BWI76_RS27345: BWI76_RS27345 - hypothetical protein, at 5,676,768 to 5,677,493
_RS27345
BWI76_RS27350: BWI76_RS27350 - hypothetical protein, at 5,677,498 to 5,678,175
_RS27350
Position (kb) 5675
5676
5677 Strain fitness (log2 ratio) -2
-1
0
1 at 5674.449 kb on - strand, within BWI76_RS27335 at 5674.459 kb on + strand, within BWI76_RS27335 at 5674.724 kb on + strand, within BWI76_RS27335 at 5675.065 kb on + strand, within BWI76_RS27335 at 5675.065 kb on + strand, within BWI76_RS27335 at 5675.193 kb on + strand at 5675.246 kb on - strand at 5675.247 kb on + strand at 5675.311 kb on + strand at 5675.319 kb on - strand at 5675.535 kb on + strand at 5675.537 kb on + strand at 5675.571 kb on + strand, within BWI76_RS27340 at 5675.891 kb on + strand at 5676.075 kb on + strand, within BWI76_RS27340 at 5676.077 kb on + strand, within BWI76_RS27340 at 5676.266 kb on - strand, within BWI76_RS27340 at 5676.405 kb on + strand, within BWI76_RS27340 at 5676.441 kb on + strand, within BWI76_RS27340 at 5676.459 kb on - strand, within BWI76_RS27340 at 5676.459 kb on - strand, within BWI76_RS27340 at 5676.513 kb on + strand, within BWI76_RS27340 at 5676.600 kb on + strand, within BWI76_RS27340 at 5676.602 kb on - strand, within BWI76_RS27340 at 5676.616 kb on + strand, within BWI76_RS27340 at 5676.785 kb on + strand at 5676.880 kb on - strand, within BWI76_RS27345 at 5676.929 kb on - strand, within BWI76_RS27345 at 5676.941 kb on + strand, within BWI76_RS27345 at 5676.941 kb on + strand, within BWI76_RS27345 at 5676.981 kb on - strand, within BWI76_RS27345 at 5677.039 kb on - strand, within BWI76_RS27345 at 5677.145 kb on + strand, within BWI76_RS27345 at 5677.249 kb on + strand, within BWI76_RS27345 at 5677.255 kb on - strand, within BWI76_RS27345 at 5677.324 kb on - strand, within BWI76_RS27345 at 5677.369 kb on - strand, within BWI76_RS27345 at 5677.553 kb on + strand at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.660 kb on - strand, within BWI76_RS27350 at 5677.739 kb on - strand, within BWI76_RS27350 at 5677.749 kb on - strand, within BWI76_RS27350
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x remove 5,674,449 - BWI76_RS27335 0.59 -0.6 5,674,459 + BWI76_RS27335 0.60 -0.1 5,674,724 + BWI76_RS27335 0.71 -0.7 5,675,065 + BWI76_RS27335 0.85 -0.2 5,675,065 + BWI76_RS27335 0.85 -0.5 5,675,193 + +0.8 5,675,246 - +0.4 5,675,247 + -2.4 5,675,311 + -0.3 5,675,319 - -0.1 5,675,535 + -0.4 5,675,537 + -0.3 5,675,571 + BWI76_RS27340 0.12 -0.1 5,675,891 + +0.6 5,676,075 + BWI76_RS27340 0.49 -1.1 5,676,077 + BWI76_RS27340 0.49 +0.2 5,676,266 - BWI76_RS27340 0.63 +1.1 5,676,405 + BWI76_RS27340 0.73 +0.4 5,676,441 + BWI76_RS27340 0.75 -0.3 5,676,459 - BWI76_RS27340 0.77 +1.0 5,676,459 - BWI76_RS27340 0.77 -0.2 5,676,513 + BWI76_RS27340 0.81 +0.2 5,676,600 + BWI76_RS27340 0.87 -0.2 5,676,602 - BWI76_RS27340 0.87 +0.3 5,676,616 + BWI76_RS27340 0.88 -0.5 5,676,785 + +0.3 5,676,880 - BWI76_RS27345 0.15 -0.3 5,676,929 - BWI76_RS27345 0.22 +0.1 5,676,941 + BWI76_RS27345 0.24 -0.2 5,676,941 + BWI76_RS27345 0.24 -0.4 5,676,981 - BWI76_RS27345 0.29 +0.1 5,677,039 - BWI76_RS27345 0.37 -0.3 5,677,145 + BWI76_RS27345 0.52 -0.3 5,677,249 + BWI76_RS27345 0.66 -0.7 5,677,255 - BWI76_RS27345 0.67 +0.3 5,677,324 - BWI76_RS27345 0.77 -0.3 5,677,369 - BWI76_RS27345 0.83 +1.2 5,677,553 + -0.0 5,677,627 - BWI76_RS27350 0.19 +0.4 5,677,627 - BWI76_RS27350 0.19 +0.3 5,677,660 - BWI76_RS27350 0.24 -0.4 5,677,739 - BWI76_RS27350 0.36 +0.4 5,677,749 - BWI76_RS27350 0.37 -0.4
Or see this region's nucleotide sequence