Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23900 and BWI76_RS23905 are separated by 159 nucleotides BWI76_RS23905 and BWI76_RS23915 are separated by 327 nucleotides BWI76_RS23915 and BWI76_RS23920 are separated by 377 nucleotides
BWI76_RS23900: BWI76_RS23900 - hypothetical protein, at 4,989,149 to 4,989,733
_RS23900
BWI76_RS23905: BWI76_RS23905 - Z-ring-associated protein, at 4,989,893 to 4,990,222
_RS23905
BWI76_RS23915: BWI76_RS23915 - 5-formyltetrahydrofolate cyclo-ligase, at 4,990,550 to 4,991,146
_RS23915
BWI76_RS23920: BWI76_RS23920 - D-3-phosphoglycerate dehydrogenase, at 4,991,524 to 4,992,756
_RS23920
Position (kb) 4990
4991
4992 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4989.661 kb on - strand, within BWI76_RS23900 at 4989.726 kb on - strand at 4989.726 kb on - strand at 4989.780 kb on - strand at 4989.815 kb on - strand at 4989.828 kb on + strand at 4989.964 kb on - strand, within BWI76_RS23905 at 4989.968 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.976 kb on - strand, within BWI76_RS23905 at 4990.133 kb on - strand, within BWI76_RS23905 at 4990.154 kb on - strand, within BWI76_RS23905 at 4990.158 kb on + strand, within BWI76_RS23905 at 4990.239 kb on + strand at 4990.247 kb on - strand at 4990.770 kb on - strand, within BWI76_RS23915 at 4991.082 kb on + strand, within BWI76_RS23915 at 4991.197 kb on + strand at 4991.198 kb on + strand at 4991.205 kb on - strand at 4991.354 kb on - strand at 4991.744 kb on + strand, within BWI76_RS23920 at 4991.783 kb on + strand, within BWI76_RS23920 at 4991.801 kb on - strand, within BWI76_RS23920 at 4991.924 kb on - strand, within BWI76_RS23920
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x remove 4,989,661 - BWI76_RS23900 0.88 -0.9 4,989,726 - -0.0 4,989,726 - +0.4 4,989,780 - -0.1 4,989,815 - -0.0 4,989,828 + -1.1 4,989,964 - BWI76_RS23905 0.22 +0.1 4,989,968 + BWI76_RS23905 0.23 -0.1 4,989,969 + BWI76_RS23905 0.23 -0.2 4,989,969 + BWI76_RS23905 0.23 -0.6 4,989,976 - BWI76_RS23905 0.25 -0.5 4,990,133 - BWI76_RS23905 0.73 +0.8 4,990,154 - BWI76_RS23905 0.79 -0.1 4,990,158 + BWI76_RS23905 0.80 -0.0 4,990,239 + -1.1 4,990,247 - -0.3 4,990,770 - BWI76_RS23915 0.37 -1.0 4,991,082 + BWI76_RS23915 0.89 -0.3 4,991,197 + -0.3 4,991,198 + -0.2 4,991,205 - -0.8 4,991,354 - -1.3 4,991,744 + BWI76_RS23920 0.18 -3.8 4,991,783 + BWI76_RS23920 0.21 -5.5 4,991,801 - BWI76_RS23920 0.22 -5.5 4,991,924 - BWI76_RS23920 0.32 -2.5
Or see this region's nucleotide sequence