Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2577

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2575 and Dshi_2576 overlap by 4 nucleotidesDshi_2576 and Dshi_2577 are separated by 100 nucleotidesDshi_2577 and Dshi_2578 are separated by 260 nucleotides Dshi_2575: Dshi_2575 - phosphoribosyl-ATP pyrophosphohydrolase (RefSeq), at 2,741,315 to 2,741,623 _2575 Dshi_2576: Dshi_2576 - imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq), at 2,741,620 to 2,742,381 _2576 Dshi_2577: Dshi_2577 - putative RNA methylase (RefSeq), at 2,742,482 to 2,743,606 _2577 Dshi_2578: Dshi_2578 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (RefSeq), at 2,743,867 to 2,744,589 _2578 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -2 -1 0 1 2at 2742.564 kb on + strandat 2742.619 kb on - strand, within Dshi_2577at 2742.704 kb on + strand, within Dshi_2577at 2742.854 kb on + strand, within Dshi_2577at 2742.956 kb on - strand, within Dshi_2577at 2743.133 kb on - strand, within Dshi_2577at 2743.255 kb on + strand, within Dshi_2577at 2743.311 kb on + strand, within Dshi_2577at 2743.373 kb on - strand, within Dshi_2577at 2743.447 kb on + strand, within Dshi_2577at 2743.498 kb on + strandat 2743.521 kb on - strandat 2743.629 kb on + strandat 2743.632 kb on - strandat 2743.638 kb on - strandat 2743.690 kb on + strandat 2743.698 kb on - strandat 2743.741 kb on + strandat 2743.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,742,564 + +0.6
2,742,619 - Dshi_2577 0.12 -0.4
2,742,704 + Dshi_2577 0.20 -1.6
2,742,854 + Dshi_2577 0.33 -2.1
2,742,956 - Dshi_2577 0.42 +0.4
2,743,133 - Dshi_2577 0.58 -1.3
2,743,255 + Dshi_2577 0.69 -0.8
2,743,311 + Dshi_2577 0.74 +0.8
2,743,373 - Dshi_2577 0.79 +0.6
2,743,447 + Dshi_2577 0.86 -0.5
2,743,498 + +0.2
2,743,521 - +0.7
2,743,629 + -1.3
2,743,632 - +0.7
2,743,638 - +0.6
2,743,690 + +2.7
2,743,698 - +0.1
2,743,741 + -2.7
2,743,855 + -0.2

Or see this region's nucleotide sequence