Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0843

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0841 and Dshi_0842 are separated by 42 nucleotidesDshi_0842 and Dshi_0843 are separated by 113 nucleotidesDshi_0843 and Dshi_0844 overlap by 1 nucleotidesDshi_0844 and Dshi_0845 overlap by 8 nucleotides Dshi_0841: Dshi_0841 - hypothetical protein (RefSeq), at 852,286 to 853,314 _0841 Dshi_0842: Dshi_0842 - transcriptional regulator, MerR family (RefSeq), at 853,357 to 853,728 _0842 Dshi_0843: Dshi_0843 - thioesterase superfamily protein (RefSeq), at 853,842 to 854,276 _0843 Dshi_0844: Dshi_0844 - thioesterase superfamily protein (RefSeq), at 854,276 to 854,797 _0844 Dshi_0845: Dshi_0845 - MATE efflux family protein (RefSeq), at 854,790 to 856,109 _0845 Position (kb) 853 854 855Strain fitness (log2 ratio) -2 -1 0 1 2at 852.863 kb on + strand, within Dshi_0841at 852.900 kb on + strand, within Dshi_0841at 853.059 kb on + strand, within Dshi_0841at 853.067 kb on - strand, within Dshi_0841at 853.087 kb on - strand, within Dshi_0841at 853.087 kb on - strand, within Dshi_0841at 853.129 kb on - strand, within Dshi_0841at 853.160 kb on - strand, within Dshi_0841at 853.191 kb on - strand, within Dshi_0841at 853.360 kb on + strandat 853.368 kb on - strandat 853.435 kb on + strand, within Dshi_0842at 853.601 kb on + strand, within Dshi_0842at 853.601 kb on + strand, within Dshi_0842at 853.626 kb on + strand, within Dshi_0842at 853.658 kb on - strand, within Dshi_0842at 853.667 kb on - strand, within Dshi_0842at 853.681 kb on + strand, within Dshi_0842at 853.689 kb on - strand, within Dshi_0842at 853.725 kb on - strandat 853.742 kb on + strandat 853.744 kb on - strandat 853.815 kb on + strandat 853.816 kb on - strandat 853.831 kb on - strandat 853.838 kb on + strandat 853.838 kb on + strandat 853.846 kb on - strandat 853.857 kb on - strandat 854.042 kb on - strand, within Dshi_0843at 854.123 kb on - strand, within Dshi_0843at 854.222 kb on - strand, within Dshi_0843at 854.284 kb on + strandat 854.682 kb on + strand, within Dshi_0844at 855.027 kb on + strand, within Dshi_0845at 855.042 kb on - strand, within Dshi_0845at 855.053 kb on + strand, within Dshi_0845at 855.063 kb on + strand, within Dshi_0845at 855.071 kb on - strand, within Dshi_0845at 855.102 kb on - strand, within Dshi_0845at 855.131 kb on + strand, within Dshi_0845at 855.131 kb on + strand, within Dshi_0845at 855.139 kb on - strand, within Dshi_0845at 855.139 kb on - strand, within Dshi_0845at 855.191 kb on + strand, within Dshi_0845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
852,863 + Dshi_0841 0.56 -0.1
852,900 + Dshi_0841 0.60 -1.5
853,059 + Dshi_0841 0.75 +0.6
853,067 - Dshi_0841 0.76 +1.8
853,087 - Dshi_0841 0.78 -0.2
853,087 - Dshi_0841 0.78 +0.6
853,129 - Dshi_0841 0.82 -0.1
853,160 - Dshi_0841 0.85 +0.7
853,191 - Dshi_0841 0.88 +0.2
853,360 + +0.3
853,368 - +0.0
853,435 + Dshi_0842 0.21 -0.5
853,601 + Dshi_0842 0.66 -0.1
853,601 + Dshi_0842 0.66 -0.3
853,626 + Dshi_0842 0.72 +0.7
853,658 - Dshi_0842 0.81 +0.8
853,667 - Dshi_0842 0.83 +0.1
853,681 + Dshi_0842 0.87 -0.0
853,689 - Dshi_0842 0.89 -0.4
853,725 - +0.2
853,742 + -1.6
853,744 - +0.0
853,815 + +1.1
853,816 - -0.4
853,831 - -0.1
853,838 + -0.2
853,838 + +0.5
853,846 - -0.1
853,857 - +0.1
854,042 - Dshi_0843 0.46 -2.0
854,123 - Dshi_0843 0.65 +0.1
854,222 - Dshi_0843 0.87 -1.3
854,284 + -0.4
854,682 + Dshi_0844 0.78 -0.1
855,027 + Dshi_0845 0.18 -0.8
855,042 - Dshi_0845 0.19 +1.3
855,053 + Dshi_0845 0.20 -0.9
855,063 + Dshi_0845 0.21 -1.3
855,071 - Dshi_0845 0.21 -1.6
855,102 - Dshi_0845 0.24 +0.2
855,131 + Dshi_0845 0.26 -0.1
855,131 + Dshi_0845 0.26 +0.2
855,139 - Dshi_0845 0.26 +0.3
855,139 - Dshi_0845 0.26 -0.7
855,191 + Dshi_0845 0.30 -0.6

Or see this region's nucleotide sequence