Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0554 and Dshi_0555 overlap by 4 nucleotides Dshi_0555 and Dshi_0556 are separated by 512 nucleotides
Dshi_0554: Dshi_0554 - short-chain dehydrogenase/reductase SDR (RefSeq), at 541,133 to 541,858
_0554
Dshi_0555: Dshi_0555 - FGGY-family pentulose kinase (RefSeq), at 541,855 to 543,489
_0555
Dshi_0556: Dshi_0556 - GreA/GreB family elongation factor (RefSeq), at 544,002 to 544,445
_0556
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.864 kb on - strand at 540.877 kb on + strand at 540.885 kb on - strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.904 kb on + strand at 540.909 kb on + strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.914 kb on + strand at 540.914 kb on + strand at 540.919 kb on + strand at 540.927 kb on - strand at 540.928 kb on + strand at 540.930 kb on + strand at 540.955 kb on + strand at 540.964 kb on + strand at 540.964 kb on + strand at 540.964 kb on + strand at 540.969 kb on + strand at 540.972 kb on - strand at 540.972 kb on - strand at 540.972 kb on - strand at 540.972 kb on - strand at 540.972 kb on - strand at 540.985 kb on + strand at 540.989 kb on - strand at 540.993 kb on - strand at 540.993 kb on - strand at 541.005 kb on - strand at 541.011 kb on + strand at 541.011 kb on + strand at 541.019 kb on - strand at 541.041 kb on + strand at 541.041 kb on + strand at 541.041 kb on + strand at 541.041 kb on + strand at 541.041 kb on + strand at 541.041 kb on + strand at 541.049 kb on - strand at 541.049 kb on - strand at 541.049 kb on - strand at 541.049 kb on - strand at 541.059 kb on - strand at 541.074 kb on + strand at 541.074 kb on + strand at 541.074 kb on + strand at 541.082 kb on - strand at 541.085 kb on + strand at 541.087 kb on + strand at 541.093 kb on - strand at 541.093 kb on - strand at 541.100 kb on - strand at 541.125 kb on + strand at 541.138 kb on - strand at 541.138 kb on - strand at 541.165 kb on + strand at 541.171 kb on - strand at 541.187 kb on + strand at 541.187 kb on + strand at 541.187 kb on + strand at 541.187 kb on + strand at 541.195 kb on - strand at 541.220 kb on + strand, within Dshi_0554 at 541.222 kb on + strand, within Dshi_0554 at 541.222 kb on + strand, within Dshi_0554 at 541.222 kb on + strand, within Dshi_0554 at 541.230 kb on - strand, within Dshi_0554 at 541.261 kb on + strand, within Dshi_0554 at 541.310 kb on + strand, within Dshi_0554 at 541.310 kb on + strand, within Dshi_0554 at 541.324 kb on + strand, within Dshi_0554 at 541.324 kb on + strand, within Dshi_0554 at 541.372 kb on + strand, within Dshi_0554 at 541.380 kb on - strand, within Dshi_0554 at 541.382 kb on + strand, within Dshi_0554 at 541.420 kb on + strand, within Dshi_0554 at 541.459 kb on - strand, within Dshi_0554 at 541.545 kb on + strand, within Dshi_0554 at 541.563 kb on + strand, within Dshi_0554 at 541.563 kb on + strand, within Dshi_0554 at 541.564 kb on - strand, within Dshi_0554 at 541.569 kb on - strand, within Dshi_0554 at 541.591 kb on - strand, within Dshi_0554 at 541.601 kb on - strand, within Dshi_0554 at 541.621 kb on - strand, within Dshi_0554 at 541.626 kb on + strand, within Dshi_0554 at 541.641 kb on + strand, within Dshi_0554 at 541.651 kb on + strand, within Dshi_0554 at 541.692 kb on - strand, within Dshi_0554 at 541.694 kb on + strand, within Dshi_0554 at 541.732 kb on + strand, within Dshi_0554 at 541.740 kb on - strand, within Dshi_0554 at 541.753 kb on + strand, within Dshi_0554 at 541.803 kb on + strand at 541.852 kb on + strand at 541.896 kb on - strand at 541.979 kb on + strand at 541.984 kb on + strand at 541.987 kb on - strand at 542.014 kb on + strand at 542.022 kb on - strand, within Dshi_0555 at 542.030 kb on - strand, within Dshi_0555 at 542.096 kb on + strand, within Dshi_0555 at 542.096 kb on + strand, within Dshi_0555 at 542.172 kb on + strand, within Dshi_0555 at 542.177 kb on + strand, within Dshi_0555 at 542.204 kb on - strand, within Dshi_0555 at 542.223 kb on + strand, within Dshi_0555 at 542.284 kb on - strand, within Dshi_0555 at 542.294 kb on - strand, within Dshi_0555 at 542.316 kb on - strand, within Dshi_0555 at 542.354 kb on + strand, within Dshi_0555 at 542.354 kb on + strand, within Dshi_0555 at 542.372 kb on + strand, within Dshi_0555 at 542.388 kb on + strand, within Dshi_0555 at 542.396 kb on - strand, within Dshi_0555 at 542.400 kb on + strand, within Dshi_0555 at 542.406 kb on + strand, within Dshi_0555 at 542.421 kb on + strand, within Dshi_0555 at 542.507 kb on + strand, within Dshi_0555 at 542.528 kb on + strand, within Dshi_0555 at 542.540 kb on + strand, within Dshi_0555 at 542.546 kb on + strand, within Dshi_0555 at 542.548 kb on - strand, within Dshi_0555 at 542.553 kb on - strand, within Dshi_0555 at 542.553 kb on - strand, within Dshi_0555 at 542.634 kb on - strand, within Dshi_0555 at 542.700 kb on + strand, within Dshi_0555 at 542.728 kb on + strand, within Dshi_0555 at 542.757 kb on + strand, within Dshi_0555 at 542.775 kb on - strand, within Dshi_0555 at 542.779 kb on + strand, within Dshi_0555 at 542.790 kb on + strand, within Dshi_0555 at 542.800 kb on + strand, within Dshi_0555 at 542.800 kb on + strand, within Dshi_0555 at 542.808 kb on - strand, within Dshi_0555 at 542.814 kb on + strand, within Dshi_0555 at 542.822 kb on - strand, within Dshi_0555 at 542.853 kb on - strand, within Dshi_0555 at 542.888 kb on - strand, within Dshi_0555 at 542.888 kb on - strand, within Dshi_0555 at 542.903 kb on + strand, within Dshi_0555 at 542.911 kb on - strand, within Dshi_0555 at 543.018 kb on + strand, within Dshi_0555 at 543.080 kb on - strand, within Dshi_0555 at 543.110 kb on + strand, within Dshi_0555 at 543.110 kb on + strand, within Dshi_0555 at 543.137 kb on + strand, within Dshi_0555 at 543.150 kb on - strand, within Dshi_0555 at 543.312 kb on - strand, within Dshi_0555 at 543.312 kb on - strand, within Dshi_0555 at 543.379 kb on + strand at 543.387 kb on - strand at 543.483 kb on + strand at 543.483 kb on + strand at 543.587 kb on - strand at 543.603 kb on + strand at 543.605 kb on + strand at 543.664 kb on - strand at 543.708 kb on + strand at 543.716 kb on - strand at 543.780 kb on + strand at 543.790 kb on + strand at 543.847 kb on + strand at 543.854 kb on - strand at 543.951 kb on - strand at 544.019 kb on + strand at 544.019 kb on + strand at 544.027 kb on - strand at 544.058 kb on + strand, within Dshi_0556 at 544.149 kb on - strand, within Dshi_0556 at 544.157 kb on - strand, within Dshi_0556 at 544.178 kb on + strand, within Dshi_0556 at 544.205 kb on + strand, within Dshi_0556 at 544.261 kb on - strand, within Dshi_0556 at 544.265 kb on + strand, within Dshi_0556 at 544.283 kb on + strand, within Dshi_0556 at 544.347 kb on + strand, within Dshi_0556 at 544.347 kb on + strand, within Dshi_0556 at 544.355 kb on - strand, within Dshi_0556 at 544.357 kb on + strand, within Dshi_0556 at 544.357 kb on - strand, within Dshi_0556 at 544.365 kb on - strand, within Dshi_0556 at 544.365 kb on - strand, within Dshi_0556 at 544.371 kb on - strand, within Dshi_0556 at 544.380 kb on - strand, within Dshi_0556 at 544.386 kb on - strand, within Dshi_0556 at 544.386 kb on - strand, within Dshi_0556 at 544.411 kb on + strand at 544.439 kb on + strand at 544.440 kb on + strand at 544.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 540,864 - -0.2 540,877 + +1.2 540,885 - -0.8 540,904 + +0.0 540,904 + +2.7 540,904 + +0.4 540,904 + -0.3 540,904 + -0.3 540,904 + -0.3 540,904 + -0.4 540,904 + +0.9 540,904 + -0.2 540,904 + -0.2 540,904 + -0.2 540,904 + -0.5 540,904 + +0.4 540,904 + -2.1 540,904 + +0.7 540,904 + -0.7 540,904 + -1.0 540,904 + +0.7 540,904 + +0.4 540,909 + -0.5 540,912 - -0.4 540,912 - -0.9 540,912 - -0.1 540,912 - -0.1 540,912 - +0.2 540,912 - -1.3 540,912 - -0.7 540,914 + -1.8 540,914 + +0.6 540,919 + +0.5 540,927 - -0.8 540,928 + +0.5 540,930 + -0.7 540,955 + -0.4 540,964 + -0.3 540,964 + +0.1 540,964 + +0.3 540,969 + -0.0 540,972 - -0.0 540,972 - -0.9 540,972 - +0.1 540,972 - +0.1 540,972 - -0.8 540,985 + -1.0 540,989 - +0.7 540,993 - +0.6 540,993 - -0.4 541,005 - -0.3 541,011 + +0.5 541,011 + +0.5 541,019 - +0.6 541,041 + -0.6 541,041 + -0.9 541,041 + -0.1 541,041 + +0.4 541,041 + -1.1 541,041 + +0.1 541,049 - +0.4 541,049 - +0.2 541,049 - -1.0 541,049 - +0.2 541,059 - +1.4 541,074 + -0.5 541,074 + +0.5 541,074 + +1.0 541,082 - +1.2 541,085 + +1.2 541,087 + +0.3 541,093 - +0.3 541,093 - -0.5 541,100 - +1.5 541,125 + -0.2 541,138 - +0.7 541,138 - -0.4 541,165 + -0.0 541,171 - -0.1 541,187 + +0.1 541,187 + +0.5 541,187 + -0.3 541,187 + -0.2 541,195 - +2.0 541,220 + Dshi_0554 0.12 -0.9 541,222 + Dshi_0554 0.12 -0.7 541,222 + Dshi_0554 0.12 -0.3 541,222 + Dshi_0554 0.12 -1.0 541,230 - Dshi_0554 0.13 +0.6 541,261 + Dshi_0554 0.18 -0.1 541,310 + Dshi_0554 0.24 -0.1 541,310 + Dshi_0554 0.24 -0.7 541,324 + Dshi_0554 0.26 +0.3 541,324 + Dshi_0554 0.26 -0.5 541,372 + Dshi_0554 0.33 +0.5 541,380 - Dshi_0554 0.34 +0.1 541,382 + Dshi_0554 0.34 +0.0 541,420 + Dshi_0554 0.40 -1.2 541,459 - Dshi_0554 0.45 -0.0 541,545 + Dshi_0554 0.57 -0.4 541,563 + Dshi_0554 0.59 +0.2 541,563 + Dshi_0554 0.59 -2.5 541,564 - Dshi_0554 0.59 -0.9 541,569 - Dshi_0554 0.60 +0.5 541,591 - Dshi_0554 0.63 +0.4 541,601 - Dshi_0554 0.64 +0.1 541,621 - Dshi_0554 0.67 -0.4 541,626 + Dshi_0554 0.68 +0.0 541,641 + Dshi_0554 0.70 -1.0 541,651 + Dshi_0554 0.71 +0.2 541,692 - Dshi_0554 0.77 +0.1 541,694 + Dshi_0554 0.77 +0.3 541,732 + Dshi_0554 0.83 +1.0 541,740 - Dshi_0554 0.84 +0.3 541,753 + Dshi_0554 0.85 +0.7 541,803 + -1.1 541,852 + -1.6 541,896 - +0.3 541,979 + +0.1 541,984 + +0.3 541,987 - +0.0 542,014 + +0.2 542,022 - Dshi_0555 0.10 -0.1 542,030 - Dshi_0555 0.11 -0.2 542,096 + Dshi_0555 0.15 -0.3 542,096 + Dshi_0555 0.15 -0.3 542,172 + Dshi_0555 0.19 -0.1 542,177 + Dshi_0555 0.20 -0.4 542,204 - Dshi_0555 0.21 -1.5 542,223 + Dshi_0555 0.23 -0.7 542,284 - Dshi_0555 0.26 -0.9 542,294 - Dshi_0555 0.27 -1.3 542,316 - Dshi_0555 0.28 -1.4 542,354 + Dshi_0555 0.31 -0.6 542,354 + Dshi_0555 0.31 +0.1 542,372 + Dshi_0555 0.32 -0.6 542,388 + Dshi_0555 0.33 +0.3 542,396 - Dshi_0555 0.33 +0.5 542,400 + Dshi_0555 0.33 -0.3 542,406 + Dshi_0555 0.34 -0.1 542,421 + Dshi_0555 0.35 +0.2 542,507 + Dshi_0555 0.40 -0.7 542,528 + Dshi_0555 0.41 -0.2 542,540 + Dshi_0555 0.42 -0.5 542,546 + Dshi_0555 0.42 -0.8 542,548 - Dshi_0555 0.42 +0.9 542,553 - Dshi_0555 0.43 +0.2 542,553 - Dshi_0555 0.43 +0.9 542,634 - Dshi_0555 0.48 +0.4 542,700 + Dshi_0555 0.52 +0.0 542,728 + Dshi_0555 0.53 +1.1 542,757 + Dshi_0555 0.55 +0.1 542,775 - Dshi_0555 0.56 -0.1 542,779 + Dshi_0555 0.57 -0.9 542,790 + Dshi_0555 0.57 +0.7 542,800 + Dshi_0555 0.58 -2.3 542,800 + Dshi_0555 0.58 +0.4 542,808 - Dshi_0555 0.58 +0.4 542,814 + Dshi_0555 0.59 -0.7 542,822 - Dshi_0555 0.59 -1.1 542,853 - Dshi_0555 0.61 +0.8 542,888 - Dshi_0555 0.63 +0.2 542,888 - Dshi_0555 0.63 -0.1 542,903 + Dshi_0555 0.64 -0.1 542,911 - Dshi_0555 0.65 +1.6 543,018 + Dshi_0555 0.71 -1.5 543,080 - Dshi_0555 0.75 +0.4 543,110 + Dshi_0555 0.77 -0.2 543,110 + Dshi_0555 0.77 -0.7 543,137 + Dshi_0555 0.78 +0.3 543,150 - Dshi_0555 0.79 +0.4 543,312 - Dshi_0555 0.89 -0.2 543,312 - Dshi_0555 0.89 +0.0 543,379 + -0.1 543,387 - -0.6 543,483 + +0.7 543,483 + +0.4 543,587 - -0.8 543,603 + -0.8 543,605 + +0.5 543,664 - +0.1 543,708 + +0.7 543,716 - -0.4 543,780 + +0.7 543,790 + -1.1 543,847 + -1.5 543,854 - -0.3 543,951 - -1.1 544,019 + -0.6 544,019 + +1.6 544,027 - +0.5 544,058 + Dshi_0556 0.13 -1.7 544,149 - Dshi_0556 0.33 +0.5 544,157 - Dshi_0556 0.35 +0.3 544,178 + Dshi_0556 0.40 -0.9 544,205 + Dshi_0556 0.46 +0.1 544,261 - Dshi_0556 0.58 +0.7 544,265 + Dshi_0556 0.59 +0.5 544,283 + Dshi_0556 0.63 +0.7 544,347 + Dshi_0556 0.78 -0.2 544,347 + Dshi_0556 0.78 +0.1 544,355 - Dshi_0556 0.80 +0.1 544,357 + Dshi_0556 0.80 -1.0 544,357 - Dshi_0556 0.80 -1.7 544,365 - Dshi_0556 0.82 -0.3 544,365 - Dshi_0556 0.82 +0.5 544,371 - Dshi_0556 0.83 -0.5 544,380 - Dshi_0556 0.85 +0.3 544,386 - Dshi_0556 0.86 -2.1 544,386 - Dshi_0556 0.86 -0.9 544,411 + -0.7 544,439 + -0.7 544,440 + -0.2 544,452 - -1.0
Or see this region's nucleotide sequence