Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0223 and Dshi_0224 are separated by 71 nucleotides Dshi_0224 and Dshi_R0002 are separated by 112 nucleotides Dshi_R0002 and Dshi_0225 are separated by 650 nucleotides
Dshi_0223: Dshi_0223 - translation elongation factor Tu (RefSeq), at 220,923 to 222,098
_0223
Dshi_0224: Dshi_0224 - hypothetical protein (RefSeq), at 222,170 to 223,045
_0224
Dshi_R0002: Dshi_R0002 - tRNA-Trp (RefSeq), at 223,158 to 223,233
_R0002
Dshi_0225: Dshi_0225 - hypothetical protein (RefSeq), at 223,884 to 224,186
_0225
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 222.353 kb on + strand, within Dshi_0224 at 222.361 kb on - strand, within Dshi_0224 at 222.423 kb on + strand, within Dshi_0224 at 222.516 kb on + strand, within Dshi_0224 at 222.657 kb on + strand, within Dshi_0224 at 222.754 kb on - strand, within Dshi_0224 at 222.785 kb on - strand, within Dshi_0224 at 222.805 kb on - strand, within Dshi_0224 at 223.026 kb on - strand at 223.235 kb on - strand at 223.237 kb on + strand at 223.306 kb on + strand at 223.394 kb on - strand at 223.448 kb on + strand at 223.456 kb on - strand at 223.456 kb on - strand at 223.560 kb on + strand at 223.620 kb on - strand at 223.673 kb on + strand at 223.681 kb on - strand at 223.681 kb on - strand at 223.681 kb on - strand at 223.681 kb on - strand at 223.681 kb on - strand at 223.770 kb on + strand at 223.783 kb on - strand at 223.783 kb on - strand at 223.783 kb on - strand at 223.807 kb on + strand at 223.807 kb on + strand at 223.812 kb on + strand at 223.815 kb on - strand at 223.877 kb on - strand at 223.979 kb on - strand, within Dshi_0225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 222,353 + Dshi_0224 0.21 -0.1 222,361 - Dshi_0224 0.22 +0.8 222,423 + Dshi_0224 0.29 -0.1 222,516 + Dshi_0224 0.39 -0.1 222,657 + Dshi_0224 0.56 -1.5 222,754 - Dshi_0224 0.67 +0.1 222,785 - Dshi_0224 0.70 -1.3 222,805 - Dshi_0224 0.72 -2.0 223,026 - +0.4 223,235 - -0.2 223,237 + +0.0 223,306 + +0.5 223,394 - +0.8 223,448 + -0.4 223,456 - -1.1 223,456 - -1.4 223,560 + +0.3 223,620 - +0.2 223,673 + -0.5 223,681 - -0.6 223,681 - -0.7 223,681 - -1.1 223,681 - +0.4 223,681 - -0.2 223,770 + +0.1 223,783 - +0.4 223,783 - -0.1 223,783 - -0.7 223,807 + +0.4 223,807 + -0.3 223,812 + -0.4 223,815 - -0.2 223,877 - -0.1 223,979 - Dshi_0225 0.31 -0.3
Or see this region's nucleotide sequence