Experiment: Formate/Acetate-Sulfite (30/30-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctN and DVUA0119.1 are separated by 3 nucleotides DVUA0119.1 and DVUA0120 are separated by 12 nucleotides DVUA0120 and DVUA0121 are separated by 1 nucleotides
DVUA0119: sctN - type III secretion system ATPase (TIGR), at 157,639 to 158,955
sctN
DVUA0119.1: DVUA0119.1 - SEED: Type III secretion spans bacterial envelope protein (YscO), at 158,959 to 159,453
DVUA0119.1
DVUA0120: DVUA0120 - type III secretion protein, putative (TIGR), at 159,466 to 160,158
DVUA0120
DVUA0121: DVUA0121 - type III secretion system protein, YopQ family (TIGR), at 160,160 to 161,614
DVUA0121
Position (kb) 158
159
160 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 158.034 kb on + strand, within sctN at 158.042 kb on - strand, within sctN at 158.066 kb on + strand, within sctN at 158.092 kb on + strand, within sctN at 158.109 kb on - strand, within sctN at 158.119 kb on + strand, within sctN at 158.242 kb on - strand, within sctN at 158.242 kb on - strand, within sctN at 158.270 kb on + strand, within sctN at 158.304 kb on + strand, within sctN at 158.334 kb on + strand, within sctN at 158.432 kb on - strand, within sctN at 158.556 kb on - strand, within sctN at 158.562 kb on + strand, within sctN at 158.562 kb on + strand, within sctN at 158.568 kb on - strand, within sctN at 158.585 kb on - strand, within sctN at 158.635 kb on + strand, within sctN at 158.705 kb on - strand, within sctN at 158.737 kb on + strand, within sctN at 158.737 kb on + strand, within sctN at 158.739 kb on + strand, within sctN at 158.745 kb on - strand, within sctN at 158.879 kb on + strand at 158.932 kb on + strand at 158.937 kb on + strand at 158.937 kb on + strand at 158.937 kb on + strand at 158.937 kb on + strand at 158.937 kb on + strand at 158.940 kb on - strand at 158.945 kb on - strand at 158.945 kb on - strand at 158.950 kb on + strand at 158.950 kb on + strand at 158.958 kb on - strand at 158.994 kb on - strand at 159.039 kb on - strand, within DVUA0119.1 at 159.046 kb on - strand, within DVUA0119.1 at 159.065 kb on - strand, within DVUA0119.1 at 159.162 kb on + strand, within DVUA0119.1 at 159.163 kb on + strand, within DVUA0119.1 at 159.163 kb on + strand, within DVUA0119.1 at 159.170 kb on - strand, within DVUA0119.1 at 159.227 kb on - strand, within DVUA0119.1 at 159.373 kb on - strand, within DVUA0119.1 at 159.414 kb on + strand at 159.422 kb on - strand at 159.440 kb on + strand at 159.521 kb on + strand at 159.589 kb on - strand, within DVUA0120 at 159.626 kb on + strand, within DVUA0120 at 159.752 kb on + strand, within DVUA0120 at 159.767 kb on + strand, within DVUA0120 at 159.920 kb on - strand, within DVUA0120 at 159.943 kb on + strand, within DVUA0120 at 159.967 kb on + strand, within DVUA0120 at 160.040 kb on + strand, within DVUA0120 at 160.165 kb on - strand at 160.192 kb on + strand at 160.192 kb on + strand at 160.200 kb on - strand at 160.330 kb on + strand, within DVUA0121 at 160.330 kb on + strand, within DVUA0121 at 160.372 kb on + strand, within DVUA0121 at 160.402 kb on - strand, within DVUA0121 at 160.406 kb on + strand, within DVUA0121 at 160.438 kb on - strand, within DVUA0121 at 160.445 kb on - strand, within DVUA0121 at 160.447 kb on + strand, within DVUA0121
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (30/30-20 mM) remove 158,034 + sctN DVUA0119 0.30 -0.2 158,042 - sctN DVUA0119 0.31 -1.0 158,066 + sctN DVUA0119 0.32 -0.1 158,092 + sctN DVUA0119 0.34 -0.2 158,109 - sctN DVUA0119 0.36 -0.1 158,119 + sctN DVUA0119 0.36 -0.1 158,242 - sctN DVUA0119 0.46 +1.6 158,242 - sctN DVUA0119 0.46 +1.1 158,270 + sctN DVUA0119 0.48 -0.2 158,304 + sctN DVUA0119 0.50 -0.1 158,334 + sctN DVUA0119 0.53 +0.1 158,432 - sctN DVUA0119 0.60 +0.4 158,556 - sctN DVUA0119 0.70 +0.0 158,562 + sctN DVUA0119 0.70 -0.3 158,562 + sctN DVUA0119 0.70 -0.3 158,568 - sctN DVUA0119 0.71 -0.4 158,585 - sctN DVUA0119 0.72 -1.7 158,635 + sctN DVUA0119 0.76 -0.1 158,705 - sctN DVUA0119 0.81 -0.6 158,737 + sctN DVUA0119 0.83 -0.4 158,737 + sctN DVUA0119 0.83 -0.3 158,739 + sctN DVUA0119 0.84 +0.1 158,745 - sctN DVUA0119 0.84 -0.9 158,879 + -0.3 158,932 + -0.1 158,937 + -1.6 158,937 + -0.0 158,937 + +0.0 158,937 + -1.4 158,937 + +0.0 158,940 - -0.1 158,945 - -1.0 158,945 - -0.5 158,950 + +0.0 158,950 + -0.7 158,958 - -0.3 158,994 - -0.2 159,039 - DVUA0119.1 0.16 -0.2 159,046 - DVUA0119.1 0.18 -0.1 159,065 - DVUA0119.1 0.21 -0.3 159,162 + DVUA0119.1 0.41 -0.1 159,163 + DVUA0119.1 0.41 -0.8 159,163 + DVUA0119.1 0.41 -0.4 159,170 - DVUA0119.1 0.43 -0.2 159,227 - DVUA0119.1 0.54 -0.0 159,373 - DVUA0119.1 0.84 -0.1 159,414 + -0.1 159,422 - +0.2 159,440 + -0.2 159,521 + -0.2 159,589 - DVUA0120 0.18 -0.5 159,626 + DVUA0120 0.23 -0.2 159,752 + DVUA0120 0.41 -0.1 159,767 + DVUA0120 0.43 -0.1 159,920 - DVUA0120 0.66 -0.6 159,943 + DVUA0120 0.69 -0.3 159,967 + DVUA0120 0.72 +0.1 160,040 + DVUA0120 0.83 +0.0 160,165 - +0.2 160,192 + +0.1 160,192 + -0.7 160,200 - -1.4 160,330 + DVUA0121 0.12 +0.1 160,330 + DVUA0121 0.12 -0.3 160,372 + DVUA0121 0.15 -0.2 160,402 - DVUA0121 0.17 -0.1 160,406 + DVUA0121 0.17 +0.3 160,438 - DVUA0121 0.19 +3.8 160,445 - DVUA0121 0.20 +0.1 160,447 + DVUA0121 0.20 +0.4
Or see this region's nucleotide sequence