Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0720

Experiment: library passed through aphids in food, 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0719 and Psyr_0720 are separated by 11 nucleotidesPsyr_0720 and Psyr_0721 are separated by 25 nucleotides Psyr_0719: Psyr_0719 - type IV pilus-associated protein, putative, at 821,149 to 824,358 _0719 Psyr_0720: Psyr_0720 - Fimbrial protein pilin, at 824,370 to 824,771 _0720 Psyr_0721: Psyr_0721 - glycine oxidase, at 824,797 to 825,900 _0721 Position (kb) 824 825Strain fitness (log2 ratio) -2 -1 0 1at 823.435 kb on + strand, within Psyr_0719at 823.435 kb on + strand, within Psyr_0719at 823.435 kb on + strand, within Psyr_0719at 823.435 kb on + strand, within Psyr_0719at 823.435 kb on + strand, within Psyr_0719at 823.435 kb on + strand, within Psyr_0719at 823.435 kb on + strand, within Psyr_0719at 823.436 kb on - strand, within Psyr_0719at 823.436 kb on - strand, within Psyr_0719at 823.436 kb on - strand, within Psyr_0719at 823.436 kb on - strand, within Psyr_0719at 823.436 kb on - strand, within Psyr_0719at 823.436 kb on - strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.439 kb on + strand, within Psyr_0719at 823.440 kb on - strand, within Psyr_0719at 823.440 kb on - strand, within Psyr_0719at 823.440 kb on - strand, within Psyr_0719at 823.440 kb on - strand, within Psyr_0719at 823.738 kb on + strand, within Psyr_0719at 823.739 kb on - strand, within Psyr_0719at 823.900 kb on + strand, within Psyr_0719at 823.900 kb on + strand, within Psyr_0719at 823.900 kb on + strand, within Psyr_0719at 823.900 kb on + strand, within Psyr_0719at 823.900 kb on + strand, within Psyr_0719at 823.900 kb on + strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.901 kb on - strand, within Psyr_0719at 823.951 kb on + strand, within Psyr_0719at 823.951 kb on + strand, within Psyr_0719at 823.952 kb on - strand, within Psyr_0719at 823.952 kb on - strand, within Psyr_0719at 823.952 kb on - strand, within Psyr_0719at 823.978 kb on + strand, within Psyr_0719at 824.000 kb on - strand, within Psyr_0719at 824.000 kb on - strand, within Psyr_0719at 824.000 kb on - strand, within Psyr_0719at 824.090 kb on + strandat 824.091 kb on - strandat 824.091 kb on - strandat 824.124 kb on + strandat 824.124 kb on + strandat 824.124 kb on + strandat 824.124 kb on + strandat 824.124 kb on + strandat 824.124 kb on + strandat 824.125 kb on - strandat 824.125 kb on - strandat 824.125 kb on - strandat 824.125 kb on - strandat 824.125 kb on - strandat 824.125 kb on - strandat 824.125 kb on - strandat 824.128 kb on + strandat 824.129 kb on - strandat 824.129 kb on - strandat 824.129 kb on - strandat 824.129 kb on - strandat 824.160 kb on + strandat 824.160 kb on + strandat 824.269 kb on - strandat 824.326 kb on + strandat 824.326 kb on + strandat 824.365 kb on + strandat 824.365 kb on + strandat 824.365 kb on + strandat 824.365 kb on + strandat 824.366 kb on - strandat 824.366 kb on - strandat 824.366 kb on - strandat 824.393 kb on + strandat 824.393 kb on + strandat 824.393 kb on + strandat 824.393 kb on + strandat 824.394 kb on - strandat 824.394 kb on - strandat 824.394 kb on - strandat 824.394 kb on - strandat 824.394 kb on - strandat 824.460 kb on + strand, within Psyr_0720at 824.460 kb on + strand, within Psyr_0720at 824.461 kb on - strand, within Psyr_0720at 824.461 kb on - strand, within Psyr_0720at 824.461 kb on - strand, within Psyr_0720at 824.461 kb on - strand, within Psyr_0720at 824.469 kb on + strand, within Psyr_0720at 824.469 kb on + strand, within Psyr_0720at 824.470 kb on - strand, within Psyr_0720at 824.501 kb on + strand, within Psyr_0720at 824.560 kb on - strand, within Psyr_0720at 824.568 kb on + strand, within Psyr_0720at 824.569 kb on - strand, within Psyr_0720at 824.569 kb on - strand, within Psyr_0720at 824.578 kb on + strand, within Psyr_0720at 824.578 kb on + strand, within Psyr_0720at 824.578 kb on + strand, within Psyr_0720at 824.579 kb on - strand, within Psyr_0720at 824.588 kb on + strand, within Psyr_0720at 824.588 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.591 kb on + strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.592 kb on - strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.595 kb on + strand, within Psyr_0720at 824.596 kb on - strand, within Psyr_0720at 824.596 kb on - strand, within Psyr_0720at 824.596 kb on - strand, within Psyr_0720at 824.596 kb on - strand, within Psyr_0720at 824.598 kb on + strand, within Psyr_0720at 824.598 kb on + strand, within Psyr_0720at 824.599 kb on - strand, within Psyr_0720at 824.599 kb on - strand, within Psyr_0720at 824.599 kb on - strand, within Psyr_0720at 824.599 kb on - strand, within Psyr_0720at 824.599 kb on - strand, within Psyr_0720at 824.599 kb on - strand, within Psyr_0720at 824.605 kb on + strand, within Psyr_0720at 824.606 kb on - strand, within Psyr_0720at 824.699 kb on + strand, within Psyr_0720at 824.699 kb on + strand, within Psyr_0720at 824.699 kb on + strand, within Psyr_0720at 824.700 kb on - strand, within Psyr_0720at 824.702 kb on + strand, within Psyr_0720at 824.703 kb on - strand, within Psyr_0720at 824.813 kb on + strandat 824.814 kb on - strandat 824.837 kb on + strandat 824.837 kb on + strandat 824.837 kb on + strandat 824.837 kb on + strandat 824.837 kb on + strandat 824.837 kb on + strandat 824.837 kb on + strandat 824.838 kb on - strandat 824.838 kb on - strandat 824.838 kb on - strandat 824.838 kb on - strandat 824.838 kb on - strandat 824.954 kb on - strand, within Psyr_0721at 825.157 kb on - strand, within Psyr_0721at 825.200 kb on - strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.214 kb on + strand, within Psyr_0721at 825.215 kb on - strand, within Psyr_0721at 825.215 kb on - strand, within Psyr_0721at 825.215 kb on - strand, within Psyr_0721at 825.215 kb on - strand, within Psyr_0721at 825.215 kb on - strand, within Psyr_0721at 825.215 kb on - strand, within Psyr_0721at 825.236 kb on + strand, within Psyr_0721at 825.236 kb on + strand, within Psyr_0721at 825.236 kb on + strand, within Psyr_0721at 825.236 kb on + strand, within Psyr_0721at 825.237 kb on - strand, within Psyr_0721at 825.237 kb on - strand, within Psyr_0721at 825.237 kb on - strand, within Psyr_0721at 825.237 kb on - strand, within Psyr_0721at 825.484 kb on + strand, within Psyr_0721at 825.484 kb on + strand, within Psyr_0721at 825.485 kb on - strand, within Psyr_0721

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours
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823,435 + Psyr_0719 0.71 -0.7
823,435 + Psyr_0719 0.71 +0.4
823,435 + Psyr_0719 0.71 -0.3
823,435 + Psyr_0719 0.71 -0.2
823,435 + Psyr_0719 0.71 -0.4
823,435 + Psyr_0719 0.71 +0.7
823,435 + Psyr_0719 0.71 -0.1
823,436 - Psyr_0719 0.71 -1.0
823,436 - Psyr_0719 0.71 -0.6
823,436 - Psyr_0719 0.71 -0.5
823,436 - Psyr_0719 0.71 +0.3
823,436 - Psyr_0719 0.71 -0.6
823,436 - Psyr_0719 0.71 -0.3
823,439 + Psyr_0719 0.71 -0.6
823,439 + Psyr_0719 0.71 +0.6
823,439 + Psyr_0719 0.71 -0.4
823,439 + Psyr_0719 0.71 +0.3
823,439 + Psyr_0719 0.71 -2.6
823,439 + Psyr_0719 0.71 -0.5
823,439 + Psyr_0719 0.71 -0.7
823,440 - Psyr_0719 0.71 +0.4
823,440 - Psyr_0719 0.71 +0.4
823,440 - Psyr_0719 0.71 -0.8
823,440 - Psyr_0719 0.71 -1.8
823,738 + Psyr_0719 0.81 +0.4
823,739 - Psyr_0719 0.81 +0.3
823,900 + Psyr_0719 0.86 -0.3
823,900 + Psyr_0719 0.86 +0.4
823,900 + Psyr_0719 0.86 -0.6
823,900 + Psyr_0719 0.86 -1.0
823,900 + Psyr_0719 0.86 -0.2
823,900 + Psyr_0719 0.86 +0.2
823,901 - Psyr_0719 0.86 -0.8
823,901 - Psyr_0719 0.86 -0.6
823,901 - Psyr_0719 0.86 -0.0
823,901 - Psyr_0719 0.86 -1.3
823,901 - Psyr_0719 0.86 -0.1
823,901 - Psyr_0719 0.86 +0.1
823,901 - Psyr_0719 0.86 +0.5
823,901 - Psyr_0719 0.86 +0.7
823,951 + Psyr_0719 0.87 +1.2
823,951 + Psyr_0719 0.87 -2.4
823,952 - Psyr_0719 0.87 -2.3
823,952 - Psyr_0719 0.87 -0.7
823,952 - Psyr_0719 0.87 -1.5
823,978 + Psyr_0719 0.88 -0.5
824,000 - Psyr_0719 0.89 +0.1
824,000 - Psyr_0719 0.89 -0.6
824,000 - Psyr_0719 0.89 +0.0
824,090 + -0.9
824,091 - -0.4
824,091 - -0.0
824,124 + -1.0
824,124 + -1.0
824,124 + -0.9
824,124 + -0.7
824,124 + +0.4
824,124 + +0.8
824,125 - +0.3
824,125 - -2.0
824,125 - +0.4
824,125 - -1.1
824,125 - +0.0
824,125 - -0.4
824,125 - -0.9
824,128 + -0.1
824,129 - +0.6
824,129 - -0.9
824,129 - -0.2
824,129 - +1.1
824,160 + -0.4
824,160 + -0.5
824,269 - -0.7
824,326 + -0.5
824,326 + +0.1
824,365 + -1.1
824,365 + -1.7
824,365 + -0.8
824,365 + -0.3
824,366 - +0.1
824,366 - -0.5
824,366 - -1.1
824,393 + -0.1
824,393 + -0.2
824,393 + -0.3
824,393 + -1.5
824,394 - -1.6
824,394 - -1.4
824,394 - -0.3
824,394 - -0.4
824,394 - -2.0
824,460 + Psyr_0720 0.22 -1.1
824,460 + Psyr_0720 0.22 -0.4
824,461 - Psyr_0720 0.23 -1.1
824,461 - Psyr_0720 0.23 -0.3
824,461 - Psyr_0720 0.23 +0.4
824,461 - Psyr_0720 0.23 -0.5
824,469 + Psyr_0720 0.25 +0.1
824,469 + Psyr_0720 0.25 -0.4
824,470 - Psyr_0720 0.25 -1.4
824,501 + Psyr_0720 0.33 +0.8
824,560 - Psyr_0720 0.47 +0.7
824,568 + Psyr_0720 0.49 -2.4
824,569 - Psyr_0720 0.50 -1.2
824,569 - Psyr_0720 0.50 -2.3
824,578 + Psyr_0720 0.52 -1.0
824,578 + Psyr_0720 0.52 -2.1
824,578 + Psyr_0720 0.52 -0.4
824,579 - Psyr_0720 0.52 -1.8
824,588 + Psyr_0720 0.54 +0.0
824,588 + Psyr_0720 0.54 +0.5
824,591 + Psyr_0720 0.55 -2.1
824,591 + Psyr_0720 0.55 +0.4
824,591 + Psyr_0720 0.55 -2.2
824,591 + Psyr_0720 0.55 +0.4
824,591 + Psyr_0720 0.55 -0.7
824,591 + Psyr_0720 0.55 -0.2
824,591 + Psyr_0720 0.55 +0.3
824,591 + Psyr_0720 0.55 +0.0
824,591 + Psyr_0720 0.55 -0.4
824,591 + Psyr_0720 0.55 -1.8
824,591 + Psyr_0720 0.55 -0.6
824,592 - Psyr_0720 0.55 -0.3
824,592 - Psyr_0720 0.55 +0.8
824,592 - Psyr_0720 0.55 +0.9
824,592 - Psyr_0720 0.55 +0.6
824,592 - Psyr_0720 0.55 -0.2
824,592 - Psyr_0720 0.55 -2.4
824,592 - Psyr_0720 0.55 -1.0
824,592 - Psyr_0720 0.55 -0.7
824,592 - Psyr_0720 0.55 +0.4
824,592 - Psyr_0720 0.55 -1.8
824,592 - Psyr_0720 0.55 +0.5
824,592 - Psyr_0720 0.55 -1.6
824,592 - Psyr_0720 0.55 -0.0
824,592 - Psyr_0720 0.55 -2.1
824,595 + Psyr_0720 0.56 -0.9
824,595 + Psyr_0720 0.56 -0.7
824,595 + Psyr_0720 0.56 -0.8
824,595 + Psyr_0720 0.56 +0.1
824,595 + Psyr_0720 0.56 -0.0
824,595 + Psyr_0720 0.56 -0.8
824,595 + Psyr_0720 0.56 -0.7
824,595 + Psyr_0720 0.56 -0.1
824,596 - Psyr_0720 0.56 +0.2
824,596 - Psyr_0720 0.56 -0.3
824,596 - Psyr_0720 0.56 -0.4
824,596 - Psyr_0720 0.56 +0.4
824,598 + Psyr_0720 0.57 -1.4
824,598 + Psyr_0720 0.57 -0.7
824,599 - Psyr_0720 0.57 -1.0
824,599 - Psyr_0720 0.57 +0.2
824,599 - Psyr_0720 0.57 +0.0
824,599 - Psyr_0720 0.57 +0.0
824,599 - Psyr_0720 0.57 -0.1
824,599 - Psyr_0720 0.57 -1.2
824,605 + Psyr_0720 0.58 -0.7
824,606 - Psyr_0720 0.59 +0.0
824,699 + Psyr_0720 0.82 -0.1
824,699 + Psyr_0720 0.82 +0.6
824,699 + Psyr_0720 0.82 -0.4
824,700 - Psyr_0720 0.82 -0.7
824,702 + Psyr_0720 0.83 -0.8
824,703 - Psyr_0720 0.83 -0.4
824,813 + +0.1
824,814 - -1.5
824,837 + +0.7
824,837 + -0.5
824,837 + -0.3
824,837 + -1.5
824,837 + +0.2
824,837 + +1.3
824,837 + +0.3
824,838 - -0.1
824,838 - -0.1
824,838 - +0.4
824,838 - -0.4
824,838 - +1.0
824,954 - Psyr_0721 0.14 -1.0
825,157 - Psyr_0721 0.33 +0.1
825,200 - Psyr_0721 0.37 -0.6
825,214 + Psyr_0721 0.38 -0.0
825,214 + Psyr_0721 0.38 +0.2
825,214 + Psyr_0721 0.38 -0.2
825,214 + Psyr_0721 0.38 +0.5
825,214 + Psyr_0721 0.38 +0.2
825,214 + Psyr_0721 0.38 -0.4
825,214 + Psyr_0721 0.38 -0.2
825,215 - Psyr_0721 0.38 +0.1
825,215 - Psyr_0721 0.38 +0.5
825,215 - Psyr_0721 0.38 +1.4
825,215 - Psyr_0721 0.38 +0.7
825,215 - Psyr_0721 0.38 -1.2
825,215 - Psyr_0721 0.38 -1.2
825,236 + Psyr_0721 0.40 +0.4
825,236 + Psyr_0721 0.40 +0.7
825,236 + Psyr_0721 0.40 +0.4
825,236 + Psyr_0721 0.40 -0.7
825,237 - Psyr_0721 0.40 +0.9
825,237 - Psyr_0721 0.40 +1.2
825,237 - Psyr_0721 0.40 -0.0
825,237 - Psyr_0721 0.40 -0.7
825,484 + Psyr_0721 0.62 -0.0
825,484 + Psyr_0721 0.62 -0.3
825,485 - Psyr_0721 0.62 +0.3

Or see this region's nucleotide sequence