Experiment: library passed through aphids in food, 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0714 and Psyr_0715 are separated by 131 nucleotides Psyr_0715 and Psyr_0716 overlap by 1 nucleotides Psyr_0716 and Psyr_0717 overlap by 4 nucleotides Psyr_0717 and Psyr_0718 are separated by 11 nucleotides
Psyr_0714: Psyr_0714 - type IV pilus biogenesis protein, at 818,332 to 818,832
_0714
Psyr_0715: Psyr_0715 - pillin, putative, at 818,964 to 819,437
_0715
Psyr_0716: Psyr_0716 - type IV pilus assembly protein PilV, at 819,437 to 819,952
_0716
Psyr_0717: Psyr_0717 - type IV pilus assembly protein PilW, at 819,949 to 820,656
_0717
Psyr_0718: Psyr_0718 - type IV pilus assembly protein PilX, at 820,668 to 821,162
_0718
Position (kb) 819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.535 kb on + strand, within Psyr_0714 at 818.548 kb on + strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.549 kb on - strand, within Psyr_0714 at 818.596 kb on + strand, within Psyr_0714 at 818.596 kb on + strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.597 kb on - strand, within Psyr_0714 at 818.800 kb on + strand at 818.800 kb on + strand at 818.832 kb on + strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.898 kb on + strand at 818.899 kb on - strand at 818.899 kb on - strand at 818.936 kb on + strand at 818.936 kb on + strand at 818.936 kb on + strand at 818.937 kb on - strand at 818.937 kb on - strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.938 kb on + strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.939 kb on - strand at 818.951 kb on + strand at 818.972 kb on + strand at 818.972 kb on + strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.973 kb on - strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.974 kb on + strand at 818.975 kb on - strand at 818.975 kb on - strand at 819.004 kb on + strand at 819.044 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.120 kb on + strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.121 kb on - strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.207 kb on + strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.208 kb on - strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.363 kb on + strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.364 kb on - strand, within Psyr_0715 at 819.391 kb on + strand at 819.392 kb on - strand at 819.392 kb on - strand at 819.557 kb on + strand, within Psyr_0716 at 819.557 kb on + strand, within Psyr_0716 at 819.558 kb on - strand, within Psyr_0716 at 819.558 kb on - strand, within Psyr_0716 at 819.558 kb on - strand, within Psyr_0716 at 819.602 kb on + strand, within Psyr_0716 at 819.640 kb on + strand, within Psyr_0716 at 819.640 kb on + strand, within Psyr_0716 at 819.641 kb on - strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.669 kb on + strand, within Psyr_0716 at 819.670 kb on - strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.676 kb on + strand, within Psyr_0716 at 819.677 kb on - strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.680 kb on + strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.681 kb on - strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.682 kb on + strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.683 kb on - strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.817 kb on + strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 819.818 kb on - strand, within Psyr_0716 at 820.037 kb on + strand, within Psyr_0717 at 820.037 kb on + strand, within Psyr_0717 at 820.038 kb on - strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.061 kb on - strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.150 kb on + strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.151 kb on - strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.174 kb on + strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.175 kb on - strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.184 kb on + strand, within Psyr_0717 at 820.185 kb on - strand, within Psyr_0717 at 820.185 kb on - strand, within Psyr_0717 at 820.194 kb on + strand, within Psyr_0717 at 820.291 kb on - strand, within Psyr_0717 at 820.326 kb on + strand, within Psyr_0717 at 820.339 kb on + strand, within Psyr_0717 at 820.340 kb on - strand, within Psyr_0717 at 820.399 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.519 kb on + strand, within Psyr_0717 at 820.520 kb on - strand, within Psyr_0717 at 820.521 kb on + strand, within Psyr_0717 at 820.522 kb on - strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.556 kb on + strand, within Psyr_0717 at 820.557 kb on - strand, within Psyr_0717 at 820.621 kb on + strand at 820.621 kb on + strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.622 kb on - strand at 820.636 kb on + strand at 820.637 kb on - strand at 820.637 kb on - strand at 820.637 kb on - strand at 820.835 kb on + strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.836 kb on - strand, within Psyr_0718 at 820.920 kb on - strand, within Psyr_0718
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours remove 818,535 + Psyr_0714 0.41 -0.6 818,548 + Psyr_0714 0.43 -0.1 818,549 - Psyr_0714 0.43 -1.4 818,549 - Psyr_0714 0.43 +0.7 818,549 - Psyr_0714 0.43 +0.4 818,549 - Psyr_0714 0.43 -1.0 818,549 - Psyr_0714 0.43 -0.1 818,596 + Psyr_0714 0.53 +1.3 818,596 + Psyr_0714 0.53 +1.0 818,597 - Psyr_0714 0.53 +0.3 818,597 - Psyr_0714 0.53 -0.3 818,597 - Psyr_0714 0.53 +0.3 818,800 + +0.5 818,800 + -0.5 818,832 + -1.2 818,898 + +0.2 818,898 + -0.3 818,898 + +0.7 818,899 - -1.7 818,899 - -0.4 818,936 + +0.2 818,936 + -0.4 818,936 + -0.2 818,937 - -0.6 818,937 - -0.2 818,938 + -0.2 818,938 + -0.3 818,938 + +1.4 818,938 + +0.8 818,939 - -0.4 818,939 - +0.5 818,939 - -0.9 818,939 - -1.1 818,939 - -0.7 818,951 + -0.6 818,972 + -0.9 818,972 + +0.5 818,973 - +0.8 818,973 - +0.7 818,973 - -1.8 818,973 - +0.1 818,973 - +1.2 818,973 - -0.5 818,974 + +0.1 818,974 + -0.3 818,974 + +0.3 818,974 + +1.5 818,974 + -0.5 818,974 + +0.5 818,975 - -0.1 818,975 - +1.3 819,004 + +0.4 819,044 + Psyr_0715 0.17 -1.3 819,120 + Psyr_0715 0.33 -0.8 819,120 + Psyr_0715 0.33 -0.4 819,120 + Psyr_0715 0.33 +0.4 819,120 + Psyr_0715 0.33 +1.2 819,121 - Psyr_0715 0.33 +0.5 819,121 - Psyr_0715 0.33 +1.4 819,121 - Psyr_0715 0.33 -0.8 819,121 - Psyr_0715 0.33 -1.9 819,121 - Psyr_0715 0.33 -0.8 819,121 - Psyr_0715 0.33 -1.3 819,207 + Psyr_0715 0.51 -1.3 819,207 + Psyr_0715 0.51 +0.4 819,207 + Psyr_0715 0.51 -1.3 819,207 + Psyr_0715 0.51 -1.5 819,207 + Psyr_0715 0.51 -0.4 819,207 + Psyr_0715 0.51 -0.7 819,207 + Psyr_0715 0.51 +0.6 819,207 + Psyr_0715 0.51 -1.2 819,207 + Psyr_0715 0.51 -0.6 819,208 - Psyr_0715 0.51 -0.2 819,208 - Psyr_0715 0.51 -1.2 819,208 - Psyr_0715 0.51 -0.1 819,208 - Psyr_0715 0.51 -0.8 819,363 + Psyr_0715 0.84 +0.1 819,363 + Psyr_0715 0.84 +1.2 819,363 + Psyr_0715 0.84 -0.1 819,364 - Psyr_0715 0.84 -1.2 819,364 - Psyr_0715 0.84 -1.3 819,364 - Psyr_0715 0.84 -0.8 819,364 - Psyr_0715 0.84 -0.0 819,364 - Psyr_0715 0.84 +0.1 819,391 + -0.8 819,392 - +2.4 819,392 - -0.4 819,557 + Psyr_0716 0.23 +0.3 819,557 + Psyr_0716 0.23 -0.5 819,558 - Psyr_0716 0.23 -0.0 819,558 - Psyr_0716 0.23 -2.0 819,558 - Psyr_0716 0.23 +0.6 819,602 + Psyr_0716 0.32 -1.0 819,640 + Psyr_0716 0.39 -1.5 819,640 + Psyr_0716 0.39 -0.2 819,641 - Psyr_0716 0.40 -0.4 819,669 + Psyr_0716 0.45 +0.0 819,669 + Psyr_0716 0.45 -1.1 819,670 - Psyr_0716 0.45 -1.0 819,676 + Psyr_0716 0.46 -0.6 819,676 + Psyr_0716 0.46 +0.1 819,676 + Psyr_0716 0.46 +1.0 819,677 - Psyr_0716 0.47 -0.6 819,680 + Psyr_0716 0.47 +0.2 819,680 + Psyr_0716 0.47 -1.7 819,680 + Psyr_0716 0.47 -1.2 819,680 + Psyr_0716 0.47 +0.0 819,680 + Psyr_0716 0.47 +0.3 819,681 - Psyr_0716 0.47 -0.6 819,681 - Psyr_0716 0.47 +0.4 819,681 - Psyr_0716 0.47 +0.7 819,681 - Psyr_0716 0.47 +0.6 819,681 - Psyr_0716 0.47 -0.8 819,682 + Psyr_0716 0.47 -0.6 819,682 + Psyr_0716 0.47 -1.1 819,683 - Psyr_0716 0.48 -0.4 819,683 - Psyr_0716 0.48 -0.2 819,683 - Psyr_0716 0.48 -0.2 819,683 - Psyr_0716 0.48 -0.1 819,683 - Psyr_0716 0.48 +0.2 819,683 - Psyr_0716 0.48 -1.0 819,683 - Psyr_0716 0.48 +0.0 819,817 + Psyr_0716 0.74 -2.1 819,817 + Psyr_0716 0.74 -0.7 819,817 + Psyr_0716 0.74 +1.1 819,817 + Psyr_0716 0.74 -0.3 819,817 + Psyr_0716 0.74 -0.4 819,818 - Psyr_0716 0.74 -0.6 819,818 - Psyr_0716 0.74 -0.8 819,818 - Psyr_0716 0.74 -0.3 819,818 - Psyr_0716 0.74 -1.2 819,818 - Psyr_0716 0.74 +0.0 820,037 + Psyr_0717 0.12 -0.8 820,037 + Psyr_0717 0.12 -1.8 820,038 - Psyr_0717 0.13 -0.4 820,061 - Psyr_0717 0.16 -1.9 820,061 - Psyr_0717 0.16 +0.4 820,150 + Psyr_0717 0.28 -1.9 820,150 + Psyr_0717 0.28 +0.1 820,150 + Psyr_0717 0.28 +0.6 820,150 + Psyr_0717 0.28 +0.8 820,150 + Psyr_0717 0.28 +1.3 820,150 + Psyr_0717 0.28 +0.5 820,150 + Psyr_0717 0.28 +0.8 820,150 + Psyr_0717 0.28 +1.4 820,150 + Psyr_0717 0.28 -0.1 820,150 + Psyr_0717 0.28 -1.9 820,150 + Psyr_0717 0.28 +0.1 820,150 + Psyr_0717 0.28 -1.9 820,150 + Psyr_0717 0.28 +0.3 820,150 + Psyr_0717 0.28 -1.4 820,150 + Psyr_0717 0.28 -0.5 820,150 + Psyr_0717 0.28 +0.2 820,150 + Psyr_0717 0.28 +0.1 820,150 + Psyr_0717 0.28 -0.4 820,150 + Psyr_0717 0.28 -0.5 820,150 + Psyr_0717 0.28 -2.9 820,151 - Psyr_0717 0.29 -3.7 820,151 - Psyr_0717 0.29 +1.3 820,151 - Psyr_0717 0.29 -2.2 820,151 - Psyr_0717 0.29 -0.4 820,151 - Psyr_0717 0.29 +0.5 820,151 - Psyr_0717 0.29 -0.5 820,151 - Psyr_0717 0.29 +0.6 820,151 - Psyr_0717 0.29 -0.4 820,151 - Psyr_0717 0.29 -0.5 820,151 - Psyr_0717 0.29 -1.9 820,151 - Psyr_0717 0.29 -0.4 820,151 - Psyr_0717 0.29 +0.1 820,151 - Psyr_0717 0.29 -1.6 820,151 - Psyr_0717 0.29 +1.1 820,151 - Psyr_0717 0.29 -0.7 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 +0.4 820,151 - Psyr_0717 0.29 -0.7 820,151 - Psyr_0717 0.29 -0.8 820,151 - Psyr_0717 0.29 -0.3 820,151 - Psyr_0717 0.29 +0.5 820,151 - Psyr_0717 0.29 -0.3 820,151 - Psyr_0717 0.29 -0.2 820,151 - Psyr_0717 0.29 -0.1 820,151 - Psyr_0717 0.29 +0.4 820,151 - Psyr_0717 0.29 -0.5 820,151 - Psyr_0717 0.29 +0.0 820,151 - Psyr_0717 0.29 +0.3 820,174 + Psyr_0717 0.32 -0.1 820,174 + Psyr_0717 0.32 -2.5 820,174 + Psyr_0717 0.32 -0.4 820,174 + Psyr_0717 0.32 +0.4 820,175 - Psyr_0717 0.32 +0.5 820,175 - Psyr_0717 0.32 -2.0 820,175 - Psyr_0717 0.32 -0.8 820,175 - Psyr_0717 0.32 +0.5 820,175 - Psyr_0717 0.32 -0.2 820,184 + Psyr_0717 0.33 -1.7 820,184 + Psyr_0717 0.33 -1.5 820,184 + Psyr_0717 0.33 +2.0 820,185 - Psyr_0717 0.33 +0.5 820,185 - Psyr_0717 0.33 +0.5 820,194 + Psyr_0717 0.35 -0.2 820,291 - Psyr_0717 0.48 -2.5 820,326 + Psyr_0717 0.53 -0.3 820,339 + Psyr_0717 0.55 -0.9 820,340 - Psyr_0717 0.55 -0.0 820,399 + Psyr_0717 0.64 -0.5 820,519 + Psyr_0717 0.81 +0.6 820,519 + Psyr_0717 0.81 +0.4 820,519 + Psyr_0717 0.81 -2.0 820,519 + Psyr_0717 0.81 -0.2 820,520 - Psyr_0717 0.81 -1.3 820,521 + Psyr_0717 0.81 -0.0 820,522 - Psyr_0717 0.81 -2.6 820,556 + Psyr_0717 0.86 +0.1 820,556 + Psyr_0717 0.86 -0.7 820,556 + Psyr_0717 0.86 +0.8 820,556 + Psyr_0717 0.86 -0.1 820,557 - Psyr_0717 0.86 -0.4 820,621 + +0.7 820,621 + -0.0 820,622 - -0.5 820,622 - +0.3 820,622 - -0.1 820,636 + -0.3 820,637 - -1.5 820,637 - -0.8 820,637 - -2.5 820,835 + Psyr_0718 0.34 -0.9 820,836 - Psyr_0718 0.34 -0.8 820,836 - Psyr_0718 0.34 +0.5 820,836 - Psyr_0718 0.34 -0.5 820,836 - Psyr_0718 0.34 -0.8 820,920 - Psyr_0718 0.51 -1.3
Or see this region's nucleotide sequence