Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00775

Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00770 and BWI76_RS00775 are separated by 241 nucleotidesBWI76_RS00775 and BWI76_RS00780 are separated by 94 nucleotidesBWI76_RS00780 and BWI76_RS00785 are separated by 266 nucleotides BWI76_RS00770: BWI76_RS00770 - primosomal protein N', at 156,482 to 158,677 _RS00770 BWI76_RS00775: BWI76_RS00775 - 50S ribosomal protein L31, at 158,919 to 159,134 _RS00775 BWI76_RS00780: BWI76_RS00780 - met repressor, at 159,229 to 159,546 _RS00780 BWI76_RS00785: BWI76_RS00785 - cystathionine gamma-synthase, at 159,813 to 160,973 _RS00785 Position (kb) 158 159 160Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 159.493 kb on + strand, within BWI76_RS00780at 159.623 kb on - strandat 159.654 kb on + strandat 159.654 kb on + strandat 159.803 kb on - strandat 159.889 kb on + strandat 160.023 kb on + strand, within BWI76_RS00785

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
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159,493 + BWI76_RS00780 0.83 -1.1
159,623 - -0.3
159,654 + -0.2
159,654 + -0.3
159,803 - -2.8
159,889 + -5.6
160,023 + BWI76_RS00785 0.18 -4.7

Or see this region's nucleotide sequence