Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3722

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3720 and Dshi_3721 overlap by 13 nucleotidesDshi_3721 and Dshi_3722 overlap by 8 nucleotidesDshi_3722 and Dshi_3723 are separated by 26 nucleotidesDshi_3723 and Dshi_3724 are separated by 41 nucleotides Dshi_3720: Dshi_3720 - molybdopterin dehydrogenase FAD-binding (RefSeq), at 127,602 to 128,429 _3720 Dshi_3721: Dshi_3721 - (2Fe-2S)-binding domain protein (RefSeq), at 128,417 to 128,926 _3721 Dshi_3722: Dshi_3722 - AMP-dependent synthetase and ligase (RefSeq), at 128,919 to 130,454 _3722 Dshi_3723: Dshi_3723 - Enoyl-CoA hydratase/isomerase (RefSeq), at 130,481 to 131,284 _3723 Dshi_3724: Dshi_3724 - Extracellular ligand-binding receptor (RefSeq), at 131,326 to 132,480 _3724 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.919 kb on - strand, within Dshi_3720at 128.013 kb on - strand, within Dshi_3720at 128.018 kb on - strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.038 kb on + strand, within Dshi_3720at 128.065 kb on + strand, within Dshi_3720at 128.065 kb on + strand, within Dshi_3720at 128.073 kb on - strand, within Dshi_3720at 128.158 kb on - strand, within Dshi_3720at 128.189 kb on + strand, within Dshi_3720at 128.200 kb on + strand, within Dshi_3720at 128.276 kb on + strand, within Dshi_3720at 128.284 kb on - strand, within Dshi_3720at 128.345 kb on + strand, within Dshi_3720at 128.345 kb on + strand, within Dshi_3720at 128.400 kb on - strandat 128.462 kb on - strandat 128.462 kb on - strandat 128.462 kb on - strandat 128.490 kb on - strand, within Dshi_3721at 128.527 kb on + strand, within Dshi_3721at 128.663 kb on + strand, within Dshi_3721at 128.669 kb on + strand, within Dshi_3721at 128.669 kb on + strand, within Dshi_3721at 128.671 kb on - strand, within Dshi_3721at 128.782 kb on + strand, within Dshi_3721at 128.891 kb on + strandat 128.906 kb on - strandat 128.906 kb on - strandat 128.909 kb on + strandat 128.997 kb on + strandat 129.047 kb on - strandat 129.060 kb on + strandat 129.090 kb on + strand, within Dshi_3722at 129.123 kb on + strand, within Dshi_3722at 129.130 kb on - strand, within Dshi_3722at 129.206 kb on + strand, within Dshi_3722at 129.214 kb on - strand, within Dshi_3722at 129.238 kb on + strand, within Dshi_3722at 129.246 kb on - strand, within Dshi_3722at 129.281 kb on - strand, within Dshi_3722at 129.281 kb on - strand, within Dshi_3722at 129.327 kb on - strand, within Dshi_3722at 129.358 kb on + strand, within Dshi_3722at 129.366 kb on - strand, within Dshi_3722at 129.373 kb on - strand, within Dshi_3722at 129.385 kb on - strand, within Dshi_3722at 129.419 kb on + strand, within Dshi_3722at 129.419 kb on + strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.427 kb on - strand, within Dshi_3722at 129.455 kb on + strand, within Dshi_3722at 129.455 kb on + strand, within Dshi_3722at 129.455 kb on + strand, within Dshi_3722at 129.463 kb on - strand, within Dshi_3722at 129.486 kb on - strand, within Dshi_3722at 129.535 kb on + strand, within Dshi_3722at 129.565 kb on - strand, within Dshi_3722at 129.583 kb on + strand, within Dshi_3722at 129.616 kb on + strand, within Dshi_3722at 129.631 kb on + strand, within Dshi_3722at 129.657 kb on - strand, within Dshi_3722at 129.673 kb on + strand, within Dshi_3722at 129.673 kb on + strand, within Dshi_3722at 129.677 kb on + strand, within Dshi_3722at 129.681 kb on - strand, within Dshi_3722at 129.681 kb on - strand, within Dshi_3722at 129.690 kb on + strand, within Dshi_3722at 129.698 kb on - strand, within Dshi_3722at 129.729 kb on + strand, within Dshi_3722at 129.737 kb on - strand, within Dshi_3722at 129.767 kb on + strand, within Dshi_3722at 129.776 kb on + strand, within Dshi_3722at 129.780 kb on - strand, within Dshi_3722at 129.830 kb on + strand, within Dshi_3722at 129.831 kb on + strand, within Dshi_3722at 129.839 kb on - strand, within Dshi_3722at 129.915 kb on + strand, within Dshi_3722at 129.915 kb on + strand, within Dshi_3722at 129.919 kb on + strand, within Dshi_3722at 129.966 kb on + strand, within Dshi_3722at 130.008 kb on - strand, within Dshi_3722at 130.016 kb on - strand, within Dshi_3722at 130.021 kb on + strand, within Dshi_3722at 130.089 kb on + strand, within Dshi_3722at 130.111 kb on - strand, within Dshi_3722at 130.130 kb on + strand, within Dshi_3722at 130.197 kb on + strand, within Dshi_3722at 130.213 kb on + strand, within Dshi_3722at 130.220 kb on - strand, within Dshi_3722at 130.221 kb on - strand, within Dshi_3722at 130.223 kb on + strand, within Dshi_3722at 130.235 kb on - strand, within Dshi_3722at 130.235 kb on - strand, within Dshi_3722at 130.275 kb on + strand, within Dshi_3722at 130.276 kb on - strand, within Dshi_3722at 130.283 kb on + strand, within Dshi_3722at 130.285 kb on + strand, within Dshi_3722at 130.285 kb on + strand, within Dshi_3722at 130.293 kb on - strand, within Dshi_3722at 130.293 kb on - strand, within Dshi_3722at 130.365 kb on - strandat 130.423 kb on + strandat 130.425 kb on + strandat 130.425 kb on + strandat 130.437 kb on - strandat 130.437 kb on - strandat 130.439 kb on - strandat 130.449 kb on + strandat 130.449 kb on + strandat 130.457 kb on - strandat 130.457 kb on - strandat 130.457 kb on - strandat 130.460 kb on + strandat 130.460 kb on + strandat 130.460 kb on + strandat 130.460 kb on + strandat 130.468 kb on - strandat 130.471 kb on - strandat 130.489 kb on + strandat 130.521 kb on - strandat 130.606 kb on + strand, within Dshi_3723at 131.047 kb on + strand, within Dshi_3723at 131.316 kb on - strandat 131.316 kb on - strandat 131.339 kb on - strandat 131.358 kb on - strandat 131.367 kb on - strandat 131.371 kb on + strandat 131.371 kb on + strandat 131.376 kb on + strandat 131.379 kb on - strandat 131.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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127,919 - Dshi_3720 0.38 +0.7
128,013 - Dshi_3720 0.50 +0.3
128,018 - Dshi_3720 0.50 +0.1
128,038 + Dshi_3720 0.53 +0.3
128,038 + Dshi_3720 0.53 -0.3
128,038 + Dshi_3720 0.53 +0.2
128,065 + Dshi_3720 0.56 -0.1
128,065 + Dshi_3720 0.56 -2.3
128,073 - Dshi_3720 0.57 +0.6
128,158 - Dshi_3720 0.67 +0.1
128,189 + Dshi_3720 0.71 -1.0
128,200 + Dshi_3720 0.72 -0.7
128,276 + Dshi_3720 0.81 -0.0
128,284 - Dshi_3720 0.82 +1.2
128,345 + Dshi_3720 0.90 +1.9
128,345 + Dshi_3720 0.90 +0.2
128,400 - -0.5
128,462 - -0.3
128,462 - +0.3
128,462 - -2.8
128,490 - Dshi_3721 0.14 +1.1
128,527 + Dshi_3721 0.22 -0.0
128,663 + Dshi_3721 0.48 -0.7
128,669 + Dshi_3721 0.49 +1.3
128,669 + Dshi_3721 0.49 +1.6
128,671 - Dshi_3721 0.50 +0.3
128,782 + Dshi_3721 0.72 +0.8
128,891 + -1.1
128,906 - +0.7
128,906 - +0.5
128,909 + +0.9
128,997 + +0.6
129,047 - +1.3
129,060 + +0.2
129,090 + Dshi_3722 0.11 -0.3
129,123 + Dshi_3722 0.13 +1.1
129,130 - Dshi_3722 0.14 -0.3
129,206 + Dshi_3722 0.19 +0.2
129,214 - Dshi_3722 0.19 -0.4
129,238 + Dshi_3722 0.21 +1.1
129,246 - Dshi_3722 0.21 +0.3
129,281 - Dshi_3722 0.24 -0.1
129,281 - Dshi_3722 0.24 +0.3
129,327 - Dshi_3722 0.27 -1.4
129,358 + Dshi_3722 0.29 +0.3
129,366 - Dshi_3722 0.29 +0.2
129,373 - Dshi_3722 0.30 -0.1
129,385 - Dshi_3722 0.30 +0.6
129,419 + Dshi_3722 0.33 +0.5
129,419 + Dshi_3722 0.33 +0.1
129,427 - Dshi_3722 0.33 +0.4
129,427 - Dshi_3722 0.33 +0.4
129,427 - Dshi_3722 0.33 -1.0
129,427 - Dshi_3722 0.33 -0.3
129,455 + Dshi_3722 0.35 +0.0
129,455 + Dshi_3722 0.35 -0.5
129,455 + Dshi_3722 0.35 +0.4
129,463 - Dshi_3722 0.35 -0.6
129,486 - Dshi_3722 0.37 -0.3
129,535 + Dshi_3722 0.40 +0.7
129,565 - Dshi_3722 0.42 -0.7
129,583 + Dshi_3722 0.43 -2.1
129,616 + Dshi_3722 0.45 +0.3
129,631 + Dshi_3722 0.46 +1.2
129,657 - Dshi_3722 0.48 -0.1
129,673 + Dshi_3722 0.49 -1.2
129,673 + Dshi_3722 0.49 +0.2
129,677 + Dshi_3722 0.49 +0.4
129,681 - Dshi_3722 0.50 +1.0
129,681 - Dshi_3722 0.50 +0.0
129,690 + Dshi_3722 0.50 -0.3
129,698 - Dshi_3722 0.51 +0.6
129,729 + Dshi_3722 0.53 -0.7
129,737 - Dshi_3722 0.53 +0.5
129,767 + Dshi_3722 0.55 -0.5
129,776 + Dshi_3722 0.56 -0.4
129,780 - Dshi_3722 0.56 +0.1
129,830 + Dshi_3722 0.59 +0.5
129,831 + Dshi_3722 0.59 +0.3
129,839 - Dshi_3722 0.60 -0.4
129,915 + Dshi_3722 0.65 +1.9
129,915 + Dshi_3722 0.65 -0.7
129,919 + Dshi_3722 0.65 +1.2
129,966 + Dshi_3722 0.68 +0.9
130,008 - Dshi_3722 0.71 +1.0
130,016 - Dshi_3722 0.71 +0.3
130,021 + Dshi_3722 0.72 -0.6
130,089 + Dshi_3722 0.76 +2.0
130,111 - Dshi_3722 0.78 -0.8
130,130 + Dshi_3722 0.79 +0.5
130,197 + Dshi_3722 0.83 +0.5
130,213 + Dshi_3722 0.84 -0.1
130,220 - Dshi_3722 0.85 +0.2
130,221 - Dshi_3722 0.85 +0.2
130,223 + Dshi_3722 0.85 -1.3
130,235 - Dshi_3722 0.86 +0.6
130,235 - Dshi_3722 0.86 +0.2
130,275 + Dshi_3722 0.88 +0.1
130,276 - Dshi_3722 0.88 -0.8
130,283 + Dshi_3722 0.89 +1.5
130,285 + Dshi_3722 0.89 +0.2
130,285 + Dshi_3722 0.89 -0.2
130,293 - Dshi_3722 0.89 +0.4
130,293 - Dshi_3722 0.89 +0.3
130,365 - +1.8
130,423 + +1.1
130,425 + +0.2
130,425 + +0.1
130,437 - +0.7
130,437 - +0.5
130,439 - +0.1
130,449 + -0.7
130,449 + +0.1
130,457 - -0.1
130,457 - +1.6
130,457 - -0.0
130,460 + +0.3
130,460 + -0.1
130,460 + +0.3
130,460 + +0.9
130,468 - +0.1
130,471 - -0.1
130,489 + -0.0
130,521 - +1.1
130,606 + Dshi_3723 0.16 +1.0
131,047 + Dshi_3723 0.70 -0.1
131,316 - +0.2
131,316 - -0.0
131,339 - +1.3
131,358 - +0.6
131,367 - +1.3
131,371 + +0.4
131,371 + +0.5
131,376 + -0.5
131,379 - +0.9
131,420 + -0.5

Or see this region's nucleotide sequence