Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0513

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0512 and Dshi_0513 are separated by 736 nucleotidesDshi_0513 and Dshi_0514 overlap by 22 nucleotidesDshi_0514 and Dshi_0515 overlap by 4 nucleotides Dshi_0512: Dshi_0512 - beta-lactamase domain protein (RefSeq), at 496,905 to 497,582 _0512 Dshi_0513: Dshi_0513 - transcriptional regulator, LuxR family (RefSeq), at 498,319 to 498,786 _0513 Dshi_0514: Dshi_0514 - response regulator receiver protein (RefSeq), at 498,765 to 498,947 _0514 Dshi_0515: Dshi_0515 - histidine kinase (RefSeq), at 498,944 to 499,843 _0515 Position (kb) 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1at 497.326 kb on + strand, within Dshi_0512at 497.378 kb on + strand, within Dshi_0512at 497.489 kb on + strand, within Dshi_0512at 497.497 kb on - strand, within Dshi_0512at 497.497 kb on - strand, within Dshi_0512at 497.529 kb on + strandat 497.545 kb on - strandat 497.711 kb on - strandat 497.743 kb on - strandat 497.796 kb on + strandat 497.805 kb on + strandat 497.805 kb on + strandat 497.874 kb on - strandat 497.907 kb on - strandat 497.907 kb on - strandat 498.032 kb on + strandat 498.040 kb on - strandat 498.040 kb on - strandat 498.046 kb on + strandat 498.046 kb on + strandat 498.073 kb on - strandat 498.172 kb on + strandat 498.368 kb on + strand, within Dshi_0513at 498.431 kb on + strand, within Dshi_0513at 498.485 kb on - strand, within Dshi_0513at 498.504 kb on + strand, within Dshi_0513at 498.504 kb on + strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.512 kb on - strand, within Dshi_0513at 498.539 kb on + strand, within Dshi_0513at 498.539 kb on + strand, within Dshi_0513at 498.574 kb on + strand, within Dshi_0513at 498.595 kb on + strand, within Dshi_0513at 498.708 kb on + strand, within Dshi_0513at 498.740 kb on - strandat 498.776 kb on - strandat 498.785 kb on + strandat 498.801 kb on + strand, within Dshi_0514at 498.831 kb on + strand, within Dshi_0514at 498.908 kb on - strand, within Dshi_0514at 498.925 kb on + strand, within Dshi_0514at 499.074 kb on - strand, within Dshi_0515at 499.107 kb on + strand, within Dshi_0515at 499.115 kb on - strand, within Dshi_0515at 499.117 kb on + strand, within Dshi_0515at 499.174 kb on + strand, within Dshi_0515at 499.182 kb on - strand, within Dshi_0515at 499.244 kb on + strand, within Dshi_0515at 499.293 kb on + strand, within Dshi_0515at 499.293 kb on + strand, within Dshi_0515at 499.296 kb on - strand, within Dshi_0515at 499.359 kb on - strand, within Dshi_0515at 499.389 kb on + strand, within Dshi_0515at 499.397 kb on - strand, within Dshi_0515at 499.433 kb on + strand, within Dshi_0515at 499.459 kb on - strand, within Dshi_0515at 499.501 kb on + strand, within Dshi_0515at 499.501 kb on + strand, within Dshi_0515at 499.570 kb on + strand, within Dshi_0515at 499.617 kb on - strand, within Dshi_0515at 499.643 kb on - strand, within Dshi_0515at 499.654 kb on - strand, within Dshi_0515at 499.664 kb on - strand, within Dshi_0515at 499.700 kb on + strand, within Dshi_0515at 499.768 kb on - strandat 499.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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497,326 + Dshi_0512 0.62 +0.5
497,378 + Dshi_0512 0.70 +0.1
497,489 + Dshi_0512 0.86 -0.6
497,497 - Dshi_0512 0.87 +0.9
497,497 - Dshi_0512 0.87 +0.2
497,529 + -0.4
497,545 - +0.1
497,711 - +0.1
497,743 - -2.3
497,796 + +0.6
497,805 + -2.8
497,805 + +0.1
497,874 - +0.1
497,907 - -1.0
497,907 - +0.5
498,032 + -1.3
498,040 - +0.8
498,040 - +0.5
498,046 + +0.3
498,046 + +0.7
498,073 - +0.7
498,172 + +0.1
498,368 + Dshi_0513 0.10 +0.2
498,431 + Dshi_0513 0.24 -0.8
498,485 - Dshi_0513 0.35 -0.1
498,504 + Dshi_0513 0.40 -0.9
498,504 + Dshi_0513 0.40 +0.6
498,512 - Dshi_0513 0.41 -0.5
498,512 - Dshi_0513 0.41 -0.1
498,512 - Dshi_0513 0.41 -0.0
498,539 + Dshi_0513 0.47 -0.9
498,539 + Dshi_0513 0.47 -0.6
498,574 + Dshi_0513 0.54 -0.7
498,595 + Dshi_0513 0.59 -0.2
498,708 + Dshi_0513 0.83 +0.1
498,740 - -0.9
498,776 - +1.1
498,785 + -0.6
498,801 + Dshi_0514 0.20 +0.1
498,831 + Dshi_0514 0.36 +0.4
498,908 - Dshi_0514 0.78 -0.4
498,925 + Dshi_0514 0.87 -0.8
499,074 - Dshi_0515 0.14 -0.3
499,107 + Dshi_0515 0.18 -0.5
499,115 - Dshi_0515 0.19 +0.2
499,117 + Dshi_0515 0.19 +0.6
499,174 + Dshi_0515 0.26 -0.7
499,182 - Dshi_0515 0.26 -0.3
499,244 + Dshi_0515 0.33 -1.7
499,293 + Dshi_0515 0.39 +1.6
499,293 + Dshi_0515 0.39 -0.5
499,296 - Dshi_0515 0.39 +0.2
499,359 - Dshi_0515 0.46 +0.4
499,389 + Dshi_0515 0.49 -0.8
499,397 - Dshi_0515 0.50 -0.4
499,433 + Dshi_0515 0.54 +0.2
499,459 - Dshi_0515 0.57 -0.2
499,501 + Dshi_0515 0.62 -0.2
499,501 + Dshi_0515 0.62 +0.7
499,570 + Dshi_0515 0.70 -0.6
499,617 - Dshi_0515 0.75 +1.0
499,643 - Dshi_0515 0.78 +0.2
499,654 - Dshi_0515 0.79 +0.7
499,664 - Dshi_0515 0.80 -1.1
499,700 + Dshi_0515 0.84 +0.5
499,768 - -0.1
499,781 - -0.9

Or see this region's nucleotide sequence