Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2208 and HP15_2209 are separated by 95 nucleotides HP15_2209 and HP15_2210 are separated by 8 nucleotides HP15_2210 and HP15_2211 overlap by 4 nucleotides HP15_2211 and HP15_2212 are separated by 160 nucleotides HP15_2212 and HP15_2213 are separated by 133 nucleotides
HP15_2208: HP15_2208 - aminodeoxychorismate lyase, at 2,327,230 to 2,328,204
_2208
HP15_2209: HP15_2209 - 4-amino-4-deoxychorismate lyase, at 2,328,300 to 2,329,118
_2209
HP15_2210: HP15_2210 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 2,329,127 to 2,329,948
_2210
HP15_2211: HP15_2211 - 3-oxoacyl-(acyl carrier protein) synthase II, at 2,329,945 to 2,330,343
_2211
HP15_2212: HP15_2212 - Acyl carrier protein, at 2,330,504 to 2,330,737
_2212
HP15_2213: HP15_2213 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,330,871 to 2,331,614
_2213
Position (kb)
2329
2330 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2328.367 kb on + strand at 2328.466 kb on + strand, within HP15_2209 at 2328.603 kb on - strand, within HP15_2209 at 2328.823 kb on + strand, within HP15_2209 at 2328.864 kb on + strand, within HP15_2209 at 2328.896 kb on + strand, within HP15_2209 at 2328.903 kb on + strand, within HP15_2209 at 2329.044 kb on - strand at 2329.182 kb on + strand at 2329.242 kb on + strand, within HP15_2210 at 2329.262 kb on + strand, within HP15_2210 at 2329.295 kb on - strand, within HP15_2210 at 2329.309 kb on - strand, within HP15_2210 at 2329.338 kb on + strand, within HP15_2210 at 2329.445 kb on - strand, within HP15_2210 at 2329.464 kb on + strand, within HP15_2210 at 2329.498 kb on - strand, within HP15_2210 at 2329.560 kb on + strand, within HP15_2210 at 2329.565 kb on + strand, within HP15_2210 at 2329.613 kb on - strand, within HP15_2210 at 2329.758 kb on + strand, within HP15_2210 at 2329.829 kb on + strand, within HP15_2210 at 2329.891 kb on + strand at 2330.025 kb on + strand, within HP15_2211 at 2330.086 kb on - strand, within HP15_2211 at 2330.098 kb on + strand, within HP15_2211 at 2330.241 kb on - strand, within HP15_2211 at 2330.328 kb on - strand at 2330.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,328,367 + -2.2 2,328,466 + HP15_2209 0.20 -1.8 2,328,603 - HP15_2209 0.37 -2.3 2,328,823 + HP15_2209 0.64 -2.1 2,328,864 + HP15_2209 0.69 -2.3 2,328,896 + HP15_2209 0.73 -0.6 2,328,903 + HP15_2209 0.74 -1.1 2,329,044 - -2.1 2,329,182 + +0.2 2,329,242 + HP15_2210 0.14 -2.1 2,329,262 + HP15_2210 0.16 -0.9 2,329,295 - HP15_2210 0.20 -1.6 2,329,309 - HP15_2210 0.22 -1.0 2,329,338 + HP15_2210 0.26 -2.3 2,329,445 - HP15_2210 0.39 -0.9 2,329,464 + HP15_2210 0.41 -2.0 2,329,498 - HP15_2210 0.45 +0.0 2,329,560 + HP15_2210 0.53 -2.9 2,329,565 + HP15_2210 0.53 -1.7 2,329,613 - HP15_2210 0.59 -0.0 2,329,758 + HP15_2210 0.77 -2.1 2,329,829 + HP15_2210 0.85 -1.8 2,329,891 + -1.6 2,330,025 + HP15_2211 0.20 -2.7 2,330,086 - HP15_2211 0.35 +0.5 2,330,098 + HP15_2211 0.38 -1.4 2,330,241 - HP15_2211 0.74 -1.3 2,330,328 - -0.9 2,330,876 - +3.3
Or see this region's nucleotide sequence