Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00560

Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00559 and CCNA_00560 are separated by 77 nucleotidesCCNA_00560 and CCNA_00561 overlap by 4 nucleotidesCCNA_00561 and CCNA_00562 overlap by 4 nucleotides CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737 _00559 CCNA_00560: CCNA_00560 - phosphohistidine phosphatase SixA, at 575,815 to 576,327 _00560 CCNA_00561: CCNA_00561 - conserved hypothetical cytosolic protein, at 576,324 to 576,668 _00561 CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723 _00562 Position (kb) 575 576 577Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 574.815 kb on - strand, within CCNA_00559at 574.818 kb on + strand, within CCNA_00559at 574.820 kb on + strand, within CCNA_00559at 574.828 kb on - strand, within CCNA_00559at 574.832 kb on + strand, within CCNA_00559at 574.892 kb on - strand, within CCNA_00559at 574.913 kb on + strand, within CCNA_00559at 574.925 kb on + strand, within CCNA_00559at 574.933 kb on - strand, within CCNA_00559at 574.956 kb on + strand, within CCNA_00559at 574.976 kb on + strand, within CCNA_00559at 574.977 kb on + strand, within CCNA_00559at 574.977 kb on + strand, within CCNA_00559at 575.051 kb on - strand, within CCNA_00559at 575.080 kb on - strand, within CCNA_00559at 575.150 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strandat 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.174 kb on + strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.182 kb on - strand, within CCNA_00559at 575.196 kb on + strand, within CCNA_00559at 575.217 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.222 kb on - strand, within CCNA_00559at 575.235 kb on - strand, within CCNA_00559at 575.240 kb on - strand, within CCNA_00559at 575.244 kb on + strand, within CCNA_00559at 575.245 kb on - strand, within CCNA_00559at 575.249 kb on + strand, within CCNA_00559at 575.250 kb on + strand, within CCNA_00559at 575.265 kb on - strand, within CCNA_00559at 575.305 kb on - strand, within CCNA_00559at 575.313 kb on + strand, within CCNA_00559at 575.328 kb on + strand, within CCNA_00559at 575.336 kb on - strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.362 kb on - strand, within CCNA_00559at 575.374 kb on + strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.384 kb on - strand, within CCNA_00559at 575.389 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.451 kb on - strand, within CCNA_00559at 575.499 kb on - strand, within CCNA_00559at 575.526 kb on + strand, within CCNA_00559at 575.546 kb on - strand, within CCNA_00559at 575.552 kb on - strand, within CCNA_00559at 575.561 kb on + strand, within CCNA_00559at 575.579 kb on - strand, within CCNA_00559at 575.584 kb on - strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.618 kb on + strand, within CCNA_00559at 575.621 kb on - strand, within CCNA_00559at 575.625 kb on - strandat 575.641 kb on - strandat 575.652 kb on + strandat 575.660 kb on - strandat 575.660 kb on - strandat 575.674 kb on - strandat 575.739 kb on - strandat 575.741 kb on - strandat 575.749 kb on - strandat 575.797 kb on - strandat 575.799 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.807 kb on - strandat 575.807 kb on - strandat 575.809 kb on - strandat 575.818 kb on + strandat 575.835 kb on - strandat 575.841 kb on + strandat 575.847 kb on + strandat 575.847 kb on + strandat 575.860 kb on + strandat 575.860 kb on + strandat 575.868 kb on - strand, within CCNA_00560at 575.868 kb on - strand, within CCNA_00560at 575.898 kb on + strand, within CCNA_00560at 575.900 kb on - strand, within CCNA_00560at 576.001 kb on + strand, within CCNA_00560at 576.027 kb on - strand, within CCNA_00560at 576.031 kb on - strand, within CCNA_00560at 576.048 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.065 kb on - strand, within CCNA_00560at 576.175 kb on + strand, within CCNA_00560at 576.175 kb on + strand, within CCNA_00560at 576.188 kb on - strand, within CCNA_00560at 576.191 kb on + strand, within CCNA_00560at 576.244 kb on + strand, within CCNA_00560at 576.263 kb on - strand, within CCNA_00560at 576.270 kb on - strand, within CCNA_00560at 576.288 kb on + strandat 576.288 kb on + strandat 576.340 kb on - strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.350 kb on - strandat 576.350 kb on - strandat 576.357 kb on + strandat 576.357 kb on + strandat 576.375 kb on + strand, within CCNA_00561at 576.375 kb on + strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.431 kb on - strand, within CCNA_00561at 576.455 kb on - strand, within CCNA_00561at 576.455 kb on - strand, within CCNA_00561at 576.470 kb on + strand, within CCNA_00561at 576.478 kb on - strand, within CCNA_00561at 576.528 kb on + strand, within CCNA_00561at 576.536 kb on - strand, within CCNA_00561at 576.536 kb on - strandat 576.536 kb on - strand, within CCNA_00561at 576.580 kb on - strand, within CCNA_00561at 576.600 kb on - strand, within CCNA_00561at 576.615 kb on + strand, within CCNA_00561at 576.669 kb on + strandat 576.695 kb on + strandat 576.695 kb on + strandat 576.703 kb on - strandat 576.703 kb on - strandat 576.703 kb on - strandat 576.727 kb on - strandat 576.742 kb on + strandat 576.747 kb on + strandat 576.750 kb on - strandat 576.761 kb on - strandat 576.761 kb on - strandat 576.761 kb on - strandat 576.783 kb on + strand, within CCNA_00562at 576.810 kb on + strand, within CCNA_00562at 576.818 kb on - strand, within CCNA_00562at 576.841 kb on - strand, within CCNA_00562at 576.890 kb on + strand, within CCNA_00562at 576.905 kb on - strand, within CCNA_00562at 576.915 kb on + strand, within CCNA_00562at 576.983 kb on + strand, within CCNA_00562at 576.998 kb on + strand, within CCNA_00562at 577.006 kb on - strand, within CCNA_00562at 577.006 kb on - strand, within CCNA_00562at 577.054 kb on - strand, within CCNA_00562at 577.072 kb on - strand, within CCNA_00562at 577.087 kb on - strand, within CCNA_00562at 577.097 kb on - strand, within CCNA_00562at 577.148 kb on + strand, within CCNA_00562at 577.188 kb on + strand, within CCNA_00562at 577.188 kb on + strand, within CCNA_00562at 577.196 kb on - strand, within CCNA_00562at 577.196 kb on - strand, within CCNA_00562at 577.205 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.218 kb on - strand, within CCNA_00562at 577.218 kb on - strand, within CCNA_00562at 577.262 kb on + strand, within CCNA_00562at 577.270 kb on - strand, within CCNA_00562at 577.272 kb on - strand, within CCNA_00562at 577.311 kb on + strand, within CCNA_00562at 577.319 kb on - strand, within CCNA_00562

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Per-strain Table

Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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574,815 - CCNA_00559 0.20 -2.6
574,818 + CCNA_00559 0.20 -2.7
574,820 + CCNA_00559 0.20 -0.1
574,828 - CCNA_00559 0.21 -2.4
574,832 + CCNA_00559 0.21 -0.8
574,892 - CCNA_00559 0.26 -1.8
574,913 + CCNA_00559 0.28 -2.0
574,925 + CCNA_00559 0.29 -3.0
574,933 - CCNA_00559 0.30 -1.6
574,956 + CCNA_00559 0.32 -2.9
574,976 + CCNA_00559 0.34 -1.5
574,977 + CCNA_00559 0.34 -2.0
574,977 + CCNA_00559 0.34 +0.5
575,051 - CCNA_00559 0.40 -4.0
575,080 - CCNA_00559 0.43 -3.6
575,150 + CCNA_00559 0.49 -1.7
575,174 + CCNA_00559 0.51 -2.0
575,174 + CCNA_00559 0.51 -0.5
575,174 + CCNA_00559 0.51 -3.2
575,174 + CCNA_00559 0.51 -3.6
575,174 + +1.5
575,174 + CCNA_00559 0.51 -1.0
575,174 + CCNA_00559 0.51 -1.9
575,174 + CCNA_00559 0.51 -4.5
575,182 - CCNA_00559 0.52 -2.3
575,182 - CCNA_00559 0.52 -0.1
575,182 - CCNA_00559 0.52 -1.5
575,182 - CCNA_00559 0.52 -3.1
575,182 - CCNA_00559 0.52 -2.0
575,182 - CCNA_00559 0.52 -3.0
575,182 - CCNA_00559 0.52 -3.4
575,182 - CCNA_00559 0.52 -2.5
575,196 + CCNA_00559 0.53 -1.3
575,217 - CCNA_00559 0.55 -3.4
575,222 - CCNA_00559 0.55 -2.2
575,222 - CCNA_00559 0.55 -0.4
575,222 - CCNA_00559 0.55 -2.1
575,235 - CCNA_00559 0.56 -2.5
575,240 - CCNA_00559 0.57 -3.3
575,244 + CCNA_00559 0.57 -2.0
575,245 - CCNA_00559 0.57 -0.7
575,249 + CCNA_00559 0.57 -2.9
575,250 + CCNA_00559 0.58 -1.0
575,265 - CCNA_00559 0.59 -4.0
575,305 - CCNA_00559 0.62 -2.9
575,313 + CCNA_00559 0.63 -1.6
575,328 + CCNA_00559 0.64 -0.8
575,336 - CCNA_00559 0.65 -2.3
575,354 + CCNA_00559 0.67 -1.7
575,354 + CCNA_00559 0.67 -2.4
575,362 - CCNA_00559 0.67 -0.2
575,374 + CCNA_00559 0.68 -3.1
575,382 - CCNA_00559 0.69 -2.9
575,382 - CCNA_00559 0.69 -2.5
575,384 - CCNA_00559 0.69 -3.5
575,389 - CCNA_00559 0.70 -3.0
575,410 - CCNA_00559 0.71 -3.4
575,410 - CCNA_00559 0.71 -1.6
575,410 - CCNA_00559 0.71 -4.1
575,451 - CCNA_00559 0.75 -4.5
575,499 - CCNA_00559 0.79 -3.6
575,526 + CCNA_00559 0.82 -1.3
575,546 - CCNA_00559 0.83 -2.3
575,552 - CCNA_00559 0.84 -1.3
575,561 + CCNA_00559 0.85 -2.1
575,579 - CCNA_00559 0.86 -3.5
575,584 - CCNA_00559 0.87 -3.5
575,586 + CCNA_00559 0.87 -1.6
575,586 + CCNA_00559 0.87 +0.2
575,586 + CCNA_00559 0.87 -2.2
575,586 + CCNA_00559 0.87 -2.8
575,586 + CCNA_00559 0.87 -2.1
575,586 + CCNA_00559 0.87 -1.9
575,586 + CCNA_00559 0.87 -2.0
575,586 + CCNA_00559 0.87 -2.4
575,586 + CCNA_00559 0.87 -1.6
575,586 + CCNA_00559 0.87 -2.5
575,594 - CCNA_00559 0.87 -2.8
575,594 - CCNA_00559 0.87 -2.7
575,594 - CCNA_00559 0.87 -2.4
575,594 - CCNA_00559 0.87 -2.7
575,594 - CCNA_00559 0.87 -2.8
575,594 - CCNA_00559 0.87 -2.8
575,594 - CCNA_00559 0.87 -0.5
575,594 - CCNA_00559 0.87 -4.2
575,594 - CCNA_00559 0.87 -4.1
575,618 + CCNA_00559 0.90 -3.4
575,621 - CCNA_00559 0.90 -2.0
575,625 - -0.5
575,641 - -2.2
575,652 + -1.1
575,660 - -2.8
575,660 - -2.1
575,674 - -2.3
575,739 - +0.7
575,741 - -1.7
575,749 - -1.8
575,797 - -0.3
575,799 + -0.1
575,801 + -0.0
575,801 + +0.5
575,801 + +1.1
575,801 + +0.6
575,801 + +0.4
575,801 + -0.3
575,807 - -0.7
575,807 - -2.0
575,809 - +0.2
575,818 + +0.5
575,835 - -0.4
575,841 + +0.5
575,847 + +1.6
575,847 + -0.4
575,860 + -0.1
575,860 + -1.4
575,868 - CCNA_00560 0.10 -1.2
575,868 - CCNA_00560 0.10 +0.2
575,898 + CCNA_00560 0.16 -1.3
575,900 - CCNA_00560 0.17 -0.6
576,001 + CCNA_00560 0.36 -0.3
576,027 - CCNA_00560 0.41 +1.2
576,031 - CCNA_00560 0.42 -0.5
576,048 + CCNA_00560 0.45 +0.3
576,057 + CCNA_00560 0.47 +0.4
576,057 + CCNA_00560 0.47 +0.0
576,057 + CCNA_00560 0.47 +0.8
576,057 + CCNA_00560 0.47 -0.4
576,065 - CCNA_00560 0.49 -0.8
576,175 + CCNA_00560 0.70 -0.3
576,175 + CCNA_00560 0.70 +0.1
576,188 - CCNA_00560 0.73 -2.0
576,191 + CCNA_00560 0.73 -0.4
576,244 + CCNA_00560 0.84 +0.5
576,263 - CCNA_00560 0.87 -1.4
576,270 - CCNA_00560 0.89 -0.6
576,288 + -0.4
576,288 + +0.3
576,340 - +1.3
576,342 + -0.5
576,342 + -0.0
576,342 + -0.1
576,342 + -0.4
576,350 - -1.6
576,350 - +1.6
576,357 + -0.0
576,357 + +1.9
576,375 + CCNA_00561 0.15 +0.1
576,375 + CCNA_00561 0.15 +1.0
576,383 - CCNA_00561 0.17 +0.7
576,383 - CCNA_00561 0.17 -0.5
576,383 - CCNA_00561 0.17 +0.7
576,383 - CCNA_00561 0.17 -0.4
576,431 - CCNA_00561 0.31 +0.2
576,455 - CCNA_00561 0.38 +0.0
576,455 - CCNA_00561 0.38 +1.9
576,470 + CCNA_00561 0.42 -0.3
576,478 - CCNA_00561 0.45 +1.0
576,528 + CCNA_00561 0.59 +0.2
576,536 - CCNA_00561 0.61 -0.1
576,536 - -0.1
576,536 - CCNA_00561 0.61 -0.8
576,580 - CCNA_00561 0.74 +0.3
576,600 - CCNA_00561 0.80 -1.1
576,615 + CCNA_00561 0.84 -0.4
576,669 + -1.7
576,695 + -3.3
576,695 + -3.8
576,703 - -2.4
576,703 - -2.8
576,703 - -3.5
576,727 - -1.7
576,742 + -0.6
576,747 + -2.9
576,750 - -3.0
576,761 - -2.7
576,761 - -2.0
576,761 - -2.0
576,783 + CCNA_00562 0.11 -2.9
576,810 + CCNA_00562 0.14 -2.0
576,818 - CCNA_00562 0.14 -1.7
576,841 - CCNA_00562 0.17 -1.5
576,890 + CCNA_00562 0.21 -3.6
576,905 - CCNA_00562 0.23 -1.0
576,915 + CCNA_00562 0.24 -1.3
576,983 + CCNA_00562 0.30 -2.8
576,998 + CCNA_00562 0.31 -2.9
577,006 - CCNA_00562 0.32 -2.8
577,006 - CCNA_00562 0.32 -3.5
577,054 - CCNA_00562 0.37 -2.1
577,072 - CCNA_00562 0.38 -0.5
577,087 - CCNA_00562 0.40 -2.2
577,097 - CCNA_00562 0.41 -3.4
577,148 + CCNA_00562 0.46 -3.9
577,188 + CCNA_00562 0.49 -3.6
577,188 + CCNA_00562 0.49 -2.8
577,196 - CCNA_00562 0.50 -2.9
577,196 - CCNA_00562 0.50 -2.4
577,205 + CCNA_00562 0.51 -2.4
577,210 + CCNA_00562 0.51 -3.5
577,210 + CCNA_00562 0.51 -0.9
577,210 + CCNA_00562 0.51 -4.3
577,210 + CCNA_00562 0.51 -3.2
577,210 + CCNA_00562 0.51 -2.5
577,210 + CCNA_00562 0.51 -1.5
577,218 - CCNA_00562 0.52 -3.8
577,218 - CCNA_00562 0.52 -1.5
577,262 + CCNA_00562 0.56 -4.9
577,270 - CCNA_00562 0.57 -3.1
577,272 - CCNA_00562 0.57 -2.5
577,311 + CCNA_00562 0.61 -3.3
577,319 - CCNA_00562 0.62 -0.2

Or see this region's nucleotide sequence