Experiment: MRS Time24hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS15785 and BBR_RS15790 are separated by 22 nucleotides BBR_RS15790 and BBR_RS15795 are separated by 125 nucleotides BBR_RS15795 and BBR_RS15800 are separated by 49 nucleotides BBR_RS15800 and BBR_RS15805 are separated by 79 nucleotides
BBR_RS15785: BBR_RS15785 - CDP-alcohol phosphatidyltransferase family protein, at 1,307,985 to 1,308,602
_RS15785
BBR_RS15790: BBR_RS15790 - ATP phosphoribosyltransferase, at 1,308,625 to 1,309,476
_RS15790
BBR_RS15795: BBR_RS15795 - phosphoribosyl-ATP diphosphatase, at 1,309,602 to 1,309,865
_RS15795
BBR_RS15800: BBR_RS15800 - ribulose-phosphate 3-epimerase, at 1,309,915 to 1,310,583
_RS15800
BBR_RS15805: BBR_RS15805 - prolipoprotein diacylglyceryl transferase, at 1,310,663 to 1,311,613
_RS15805
Position (kb) 1309
1310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1308.704 kb on + strand at 1308.718 kb on - strand, within BBR_RS15790 at 1308.718 kb on - strand, within BBR_RS15790 at 1308.734 kb on + strand, within BBR_RS15790 at 1308.770 kb on - strand, within BBR_RS15790 at 1308.808 kb on - strand, within BBR_RS15790 at 1308.852 kb on - strand, within BBR_RS15790 at 1308.857 kb on - strand, within BBR_RS15790 at 1308.859 kb on + strand, within BBR_RS15790 at 1308.873 kb on - strand, within BBR_RS15790 at 1308.880 kb on + strand, within BBR_RS15790 at 1308.990 kb on + strand, within BBR_RS15790 at 1308.998 kb on - strand, within BBR_RS15790 at 1309.009 kb on - strand, within BBR_RS15790 at 1309.049 kb on - strand, within BBR_RS15790 at 1309.049 kb on - strand, within BBR_RS15790 at 1309.049 kb on - strand, within BBR_RS15790 at 1309.069 kb on - strand, within BBR_RS15790 at 1309.137 kb on - strand, within BBR_RS15790 at 1309.148 kb on + strand, within BBR_RS15790 at 1309.166 kb on - strand, within BBR_RS15790 at 1309.166 kb on - strand, within BBR_RS15790 at 1309.191 kb on - strand, within BBR_RS15790 at 1309.295 kb on - strand, within BBR_RS15790 at 1309.352 kb on - strand, within BBR_RS15790 at 1309.441 kb on - strand at 1309.492 kb on - strand at 1309.497 kb on - strand at 1309.497 kb on - strand at 1309.565 kb on + strand at 1309.585 kb on - strand at 1309.585 kb on - strand at 1309.629 kb on + strand, within BBR_RS15795 at 1309.629 kb on + strand, within BBR_RS15795 at 1309.638 kb on - strand, within BBR_RS15795 at 1309.638 kb on - strand, within BBR_RS15795 at 1309.663 kb on + strand, within BBR_RS15795 at 1309.705 kb on + strand, within BBR_RS15795 at 1309.715 kb on - strand, within BBR_RS15795 at 1309.715 kb on - strand, within BBR_RS15795 at 1309.903 kb on - strand at 1309.913 kb on + strand at 1309.921 kb on - strand at 1309.926 kb on - strand at 1309.937 kb on + strand at 1310.599 kb on - strand at 1310.635 kb on + strand at 1310.635 kb on + strand at 1310.646 kb on + strand at 1310.717 kb on + strand at 1310.725 kb on - strand at 1310.747 kb on - strand at 1310.762 kb on + strand, within BBR_RS15805 at 1310.763 kb on + strand, within BBR_RS15805 at 1310.817 kb on - strand, within BBR_RS15805 at 1310.817 kb on - strand, within BBR_RS15805
Per-strain Table
Position Strand Gene LocusTag Fraction MRS Time24hr remove 1,308,704 + -1.8 1,308,718 - BBR_RS15790 0.11 -0.6 1,308,718 - BBR_RS15790 0.11 +1.3 1,308,734 + BBR_RS15790 0.13 +0.0 1,308,770 - BBR_RS15790 0.17 -1.0 1,308,808 - BBR_RS15790 0.21 +2.0 1,308,852 - BBR_RS15790 0.27 -2.0 1,308,857 - BBR_RS15790 0.27 -2.6 1,308,859 + BBR_RS15790 0.27 +0.0 1,308,873 - BBR_RS15790 0.29 +0.2 1,308,880 + BBR_RS15790 0.30 +0.0 1,308,990 + BBR_RS15790 0.43 +2.7 1,308,998 - BBR_RS15790 0.44 +1.6 1,309,009 - BBR_RS15790 0.45 +0.6 1,309,049 - BBR_RS15790 0.50 +0.8 1,309,049 - BBR_RS15790 0.50 -2.1 1,309,049 - BBR_RS15790 0.50 +1.6 1,309,069 - BBR_RS15790 0.52 -0.3 1,309,137 - BBR_RS15790 0.60 +0.0 1,309,148 + BBR_RS15790 0.61 +0.7 1,309,166 - BBR_RS15790 0.63 -0.3 1,309,166 - BBR_RS15790 0.63 +0.5 1,309,191 - BBR_RS15790 0.66 +1.6 1,309,295 - BBR_RS15790 0.79 -1.6 1,309,352 - BBR_RS15790 0.85 -1.3 1,309,441 - -1.0 1,309,492 - +0.9 1,309,497 - +0.0 1,309,497 - +0.0 1,309,565 + +0.4 1,309,585 - -0.2 1,309,585 - -1.0 1,309,629 + BBR_RS15795 0.10 +1.3 1,309,629 + BBR_RS15795 0.10 +1.6 1,309,638 - BBR_RS15795 0.14 +0.6 1,309,638 - BBR_RS15795 0.14 +2.1 1,309,663 + BBR_RS15795 0.23 +0.6 1,309,705 + BBR_RS15795 0.39 -1.6 1,309,715 - BBR_RS15795 0.43 -0.6 1,309,715 - BBR_RS15795 0.43 +3.5 1,309,903 - +0.4 1,309,913 + -1.6 1,309,921 - -3.7 1,309,926 - +1.6 1,309,937 + +0.0 1,310,599 - -1.1 1,310,635 + -0.6 1,310,635 + +2.6 1,310,646 + +0.3 1,310,717 + +0.0 1,310,725 - -1.1 1,310,747 - +1.3 1,310,762 + BBR_RS15805 0.10 -3.1 1,310,763 + BBR_RS15805 0.11 -1.6 1,310,817 - BBR_RS15805 0.16 +1.0 1,310,817 - BBR_RS15805 0.16 -0.1
Or see this region's nucleotide sequence