Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3335

Experiment: Formate/Acetate-Sulfite (30/30-20 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (30/30-20 mM)
3,507,663	-		DVU3334	0.30	+0.3
3,507,701	+		DVU3334	0.33	+0.3
3,507,701	+		DVU3334	0.33	-0.3
3,507,701	+		DVU3334	0.33	-0.0
3,507,714	-		DVU3334	0.34	+0.1
3,507,840	+		DVU3334	0.43	+0.8
3,507,897	-		DVU3334	0.47	-0.6
3,507,962	+		DVU3334	0.52	+0.2
3,508,015	-		DVU3334	0.56	-0.6
3,508,022	+		DVU3334	0.57	-0.1
3,508,048	+		DVU3334	0.59	-0.3
3,508,073	-		DVU3334	0.60	+0.0
3,508,105	-		DVU3334	0.63	+0.3
3,508,112	-		DVU3334	0.63	-0.3
3,508,146	-		DVU3334	0.66	-0.0
3,508,184	+		DVU3334	0.69	-0.7
3,508,238	+		DVU3334	0.73	-0.5
3,508,284	+		DVU3334	0.76	-0.3
3,508,284	+		DVU3334	0.76	+0.2
3,508,314	-		DVU3334	0.78	+0.5
3,508,377	-		DVU3334	0.83	-0.7
3,508,436	-		DVU3334	0.87	-0.3
3,508,472	+				+0.4
3,508,480	-				-0.3
3,508,483	-				+0.1
3,508,504	+				-0.1
3,508,602	+				+0.0
3,508,614	+				-0.1
3,508,635	-				-0.1
3,508,635	-				-0.9
3,508,705	+				-0.3
3,508,713	-				-0.3
3,508,761	-				+0.6
3,508,805	+		DVU3335	0.11	+0.1
3,508,866	+		DVU3335	0.15	-0.1
3,508,875	+		DVU3335	0.15	+0.0
3,508,883	+		DVU3335	0.16	-0.2
3,508,901	-		DVU3335	0.17	-1.4
3,508,901	-		DVU3335	0.17	+0.3
3,508,901	-		DVU3335	0.17	-0.2
3,508,908	-		DVU3335	0.17	-1.0
3,508,926	+		DVU3335	0.18	-0.4
3,508,980	-		DVU3335	0.21	-0.4
3,509,041	+		DVU3335	0.25	+0.3
3,509,057	+		DVU3335	0.25	-0.2
3,509,065	-		DVU3335	0.26	-0.5
3,509,077	+		DVU3335	0.27	+0.0
3,509,162	+		DVU3335	0.31	-0.2
3,509,177	+		DVU3335	0.32	-0.0
3,509,221	-		DVU3335	0.35	-0.5
3,509,236	+		DVU3335	0.36	-0.2
3,509,252	-		DVU3335	0.36	+0.2
3,509,322	-		DVU3335	0.40	-0.5
3,509,329	-		DVU3335	0.41	+0.0
3,509,359	+		DVU3335	0.42	-2.1
3,509,450	+		DVU3335	0.48	+0.5
3,509,450	+		DVU3335	0.48	+0.1
3,509,464	-		DVU3335	0.48	-0.1
3,509,524	-		DVU3335	0.52	+0.4
3,509,533	+		DVU3335	0.52	+0.1
3,509,547	+		DVU3335	0.53	-0.4
3,509,609	+		DVU3335	0.56	-0.4
3,509,632	+		DVU3335	0.58	+1.0
3,509,699	+		DVU3335	0.62	-0.0
3,509,772	-		DVU3335	0.66	-1.3
3,509,810	+		DVU3335	0.68	-0.4
3,509,810	+		DVU3335	0.68	+0.2
3,509,818	-		DVU3335	0.68	+0.0
3,509,968	-		DVU3335	0.77	-0.3
3,510,028	-		DVU3335	0.80	-0.6
3,510,033	-		DVU3335	0.80	+0.2
3,510,052	-		DVU3335	0.81	+0.6
3,510,052	-		DVU3335	0.81	+1.0
3,510,106	-		DVU3335	0.84	-1.1
3,510,135	+		DVU3335	0.86	-0.3
3,510,154	+		DVU3335	0.87	-0.3
3,510,156	+		DVU3335	0.87	-0.4
3,510,156	+		DVU3335	0.87	-0.1
3,510,156	+		DVU3335	0.87	+0.4
3,510,156	+		DVU3335	0.87	+0.2
3,510,162	-		DVU3335	0.87	-0.9
3,510,171	+		DVU3335	0.88	+0.2
3,510,237	-				-0.0
3,510,238	+				+0.2
3,510,255	+				-0.6
3,510,293	+				+0.5
3,510,476	+				+0.5
3,510,601	+	kdpD	DVU3336	0.19	-0.1
3,510,627	-	kdpD	DVU3336	0.22	-0.6
3,510,638	-	kdpD	DVU3336	0.23	-0.2
3,510,653	-	kdpD	DVU3336	0.24	-0.1
3,510,700	+	kdpD	DVU3336	0.28	-0.2
3,510,708	+	kdpD	DVU3336	0.29	-0.2
3,510,720	-	kdpD	DVU3336	0.30	+0.0
3,510,723	-	kdpD	DVU3336	0.30	+0.8
3,510,778	-	kdpD	DVU3336	0.35	-0.9
3,510,788	-	kdpD	DVU3336	0.36	+0.2
3,510,790	-	kdpD	DVU3336	0.36	+0.1
3,510,847	+	kdpD	DVU3336	0.41	-0.8
3,510,881	+	kdpD	DVU3336	0.44	-0.2
3,510,889	-	kdpD	DVU3336	0.45	-0.0
3,510,889	-	kdpD	DVU3336	0.45	+0.3
3,510,889	-	kdpD	DVU3336	0.45	+2.1
3,510,889	-	kdpD	DVU3336	0.45	+0.1
3,510,914	-	kdpD	DVU3336	0.47	-0.1
3,510,932	+	kdpD	DVU3336	0.48	+1.0
3,510,947	+	kdpD	DVU3336	0.50	-0.3
3,510,955	-	kdpD	DVU3336	0.50	-0.4
3,510,958	-	kdpD	DVU3336	0.51	+1.5
3,511,346	-	kdpD	DVU3336	0.85	+0.1
3,511,356	+	kdpD	DVU3336	0.86	-0.7
3,511,374	+	kdpD	DVU3336	0.87	-0.5
3,511,374	+	kdpD	DVU3336	0.87	-0.5
3,511,374	+	kdpD	DVU3336	0.87	-1.6
3,511,382	-	kdpD	DVU3336	0.88	-0.5
3,511,382	-	kdpD	DVU3336	0.88	+1.6