Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_869 and HP15_870 are separated by 99 nucleotides HP15_870 and HP15_871 are separated by 20 nucleotides HP15_871 and HP15_872 are separated by 60 nucleotides
HP15_869: HP15_869 - lysine exporter protein (LYSE/YGGA), at 889,266 to 889,871
_869
HP15_870: HP15_870 - conserved hypothetical protein, membrane, at 889,971 to 890,444
_870
HP15_871: HP15_871 - NLP/P60 family protein, at 890,465 to 891,079
_871
HP15_872: HP15_872 - nitroreductase-like protein, at 891,140 to 892,168
_872
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 889.601 kb on + strand, within HP15_869 at 889.601 kb on + strand, within HP15_869 at 889.723 kb on - strand, within HP15_869 at 889.735 kb on + strand, within HP15_869 at 889.743 kb on - strand, within HP15_869 at 889.837 kb on + strand at 889.955 kb on - strand at 890.040 kb on + strand, within HP15_870 at 890.060 kb on - strand, within HP15_870 at 890.139 kb on + strand, within HP15_870 at 890.155 kb on - strand, within HP15_870 at 890.250 kb on + strand, within HP15_870 at 890.451 kb on - strand at 890.564 kb on + strand, within HP15_871 at 890.669 kb on - strand, within HP15_871 at 890.707 kb on + strand, within HP15_871 at 890.744 kb on + strand, within HP15_871 at 890.835 kb on - strand, within HP15_871 at 890.858 kb on + strand, within HP15_871 at 890.955 kb on + strand, within HP15_871 at 890.965 kb on + strand, within HP15_871 at 890.973 kb on - strand, within HP15_871 at 891.103 kb on + strand at 891.132 kb on - strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.238 kb on - strand at 891.393 kb on - strand, within HP15_872 at 891.431 kb on - strand, within HP15_872 at 891.548 kb on - strand, within HP15_872 at 891.565 kb on - strand, within HP15_872 at 891.586 kb on + strand, within HP15_872 at 891.594 kb on - strand, within HP15_872 at 891.596 kb on + strand, within HP15_872 at 891.638 kb on - strand, within HP15_872 at 891.658 kb on + strand, within HP15_872 at 891.711 kb on + strand, within HP15_872 at 891.738 kb on + strand, within HP15_872 at 891.789 kb on + strand, within HP15_872 at 891.797 kb on - strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.881 kb on - strand, within HP15_872 at 891.892 kb on + strand, within HP15_872 at 892.055 kb on - strand, within HP15_872
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 889,601 + HP15_869 0.55 -0.3 889,601 + HP15_869 0.55 -0.2 889,723 - HP15_869 0.75 -0.2 889,735 + HP15_869 0.77 +0.1 889,743 - HP15_869 0.79 +0.1 889,837 + -1.1 889,955 - +0.4 890,040 + HP15_870 0.15 +0.1 890,060 - HP15_870 0.19 +0.5 890,139 + HP15_870 0.35 -0.3 890,155 - HP15_870 0.39 -0.4 890,250 + HP15_870 0.59 +0.2 890,451 - -0.6 890,564 + HP15_871 0.16 +4.5 890,669 - HP15_871 0.33 +1.2 890,707 + HP15_871 0.39 -0.1 890,744 + HP15_871 0.45 -0.6 890,835 - HP15_871 0.60 -0.4 890,858 + HP15_871 0.64 +1.2 890,955 + HP15_871 0.80 +0.2 890,965 + HP15_871 0.81 -0.0 890,973 - HP15_871 0.83 +0.2 891,103 + +0.6 891,132 - -0.4 891,162 + +0.5 891,162 + +0.2 891,238 - +0.6 891,393 - HP15_872 0.25 -0.1 891,431 - HP15_872 0.28 -0.4 891,548 - HP15_872 0.40 +0.4 891,565 - HP15_872 0.41 -0.4 891,586 + HP15_872 0.43 +1.0 891,594 - HP15_872 0.44 +0.1 891,596 + HP15_872 0.44 +0.2 891,638 - HP15_872 0.48 +0.4 891,658 + HP15_872 0.50 +0.3 891,711 + HP15_872 0.55 +0.3 891,738 + HP15_872 0.58 +0.4 891,789 + HP15_872 0.63 -0.5 891,797 - HP15_872 0.64 +0.6 891,879 + HP15_872 0.72 -0.1 891,879 + HP15_872 0.72 -0.2 891,881 - HP15_872 0.72 +0.6 891,892 + HP15_872 0.73 -0.1 892,055 - HP15_872 0.89 +0.2
Or see this region's nucleotide sequence