Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_529 and HP15_530 are separated by 49 nucleotides HP15_530 and HP15_531 are separated by 520 nucleotides
HP15_529: HP15_529 - protein disaggregation chaperone, at 544,558 to 547,134
_529
HP15_530: HP15_530 - conserved hypothetical protein, secreted, at 547,184 to 547,657
_530
HP15_531: HP15_531 - acetolactate synthase, large subunit, biosynthetic type, at 548,178 to 549,896
_531
Position (kb) 547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 546.209 kb on - strand, within HP15_529 at 546.297 kb on + strand, within HP15_529 at 546.297 kb on + strand, within HP15_529 at 546.305 kb on - strand, within HP15_529 at 546.305 kb on - strand, within HP15_529 at 546.305 kb on - strand, within HP15_529 at 546.406 kb on + strand, within HP15_529 at 546.513 kb on - strand, within HP15_529 at 546.513 kb on - strand, within HP15_529 at 546.541 kb on - strand, within HP15_529 at 546.545 kb on + strand, within HP15_529 at 546.605 kb on + strand, within HP15_529 at 546.666 kb on + strand, within HP15_529 at 546.666 kb on + strand, within HP15_529 at 546.674 kb on - strand, within HP15_529 at 546.674 kb on - strand, within HP15_529 at 546.700 kb on + strand, within HP15_529 at 546.707 kb on + strand, within HP15_529 at 546.715 kb on - strand, within HP15_529 at 546.715 kb on - strand, within HP15_529 at 546.753 kb on + strand, within HP15_529 at 546.950 kb on - strand at 547.052 kb on - strand at 547.100 kb on - strand at 547.161 kb on + strand at 547.240 kb on - strand, within HP15_530 at 547.372 kb on + strand, within HP15_530 at 547.540 kb on + strand, within HP15_530 at 547.624 kb on + strand at 547.704 kb on + strand at 547.704 kb on + strand at 547.829 kb on + strand at 547.853 kb on + strand at 548.030 kb on + strand at 548.130 kb on + strand at 548.138 kb on - strand at 548.202 kb on + strand at 548.288 kb on + strand at 548.292 kb on + strand at 548.326 kb on - strand at 548.563 kb on + strand, within HP15_531 at 548.577 kb on - strand, within HP15_531 at 548.618 kb on - strand, within HP15_531
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 546,209 - HP15_529 0.64 +0.1 546,297 + HP15_529 0.67 +0.2 546,297 + HP15_529 0.67 -1.8 546,305 - HP15_529 0.68 +2.4 546,305 - HP15_529 0.68 -0.3 546,305 - HP15_529 0.68 -0.1 546,406 + HP15_529 0.72 +0.0 546,513 - HP15_529 0.76 -0.1 546,513 - HP15_529 0.76 +0.3 546,541 - HP15_529 0.77 -0.4 546,545 + HP15_529 0.77 +0.6 546,605 + HP15_529 0.79 -0.2 546,666 + HP15_529 0.82 -0.4 546,666 + HP15_529 0.82 +0.1 546,674 - HP15_529 0.82 -0.2 546,674 - HP15_529 0.82 +0.1 546,700 + HP15_529 0.83 -0.6 546,707 + HP15_529 0.83 -0.4 546,715 - HP15_529 0.84 +0.0 546,715 - HP15_529 0.84 -0.9 546,753 + HP15_529 0.85 -0.1 546,950 - +0.2 547,052 - -0.7 547,100 - -0.3 547,161 + +0.8 547,240 - HP15_530 0.12 -0.9 547,372 + HP15_530 0.40 -0.8 547,540 + HP15_530 0.75 -0.8 547,624 + -1.1 547,704 + -0.1 547,704 + +0.4 547,829 + -0.2 547,853 + +0.3 548,030 + +0.3 548,130 + -0.0 548,138 - -0.9 548,202 + -1.5 548,288 + -0.8 548,292 + -0.7 548,326 - -3.7 548,563 + HP15_531 0.22 -0.1 548,577 - HP15_531 0.23 -0.4 548,618 - HP15_531 0.26 -2.2
Or see this region's nucleotide sequence