Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_457 and HP15_458 are separated by 119 nucleotides HP15_458 and HP15_459 are separated by 46 nucleotides HP15_459 and HP15_460 are separated by 184 nucleotides
HP15_457: HP15_457 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 461,617 to 463,896
_457
HP15_458: HP15_458 - transcriptional regulator, LysR family protein, at 464,016 to 464,906
_458
HP15_459: HP15_459 - glycine cleavage H-protein, subgroup, at 464,953 to 465,345
_459
HP15_460: HP15_460 - SAM-dependent methyltransferase, at 465,530 to 466,735
_460
Position (kb) 464
465 Strain fitness (log2 ratio) -2
-1
0
1 at 463.202 kb on + strand, within HP15_457 at 463.202 kb on + strand, within HP15_457 at 463.210 kb on - strand, within HP15_457 at 463.210 kb on - strand, within HP15_457 at 463.232 kb on - strand, within HP15_457 at 463.258 kb on + strand, within HP15_457 at 463.331 kb on - strand, within HP15_457 at 463.341 kb on + strand, within HP15_457 at 463.439 kb on - strand, within HP15_457 at 463.603 kb on + strand, within HP15_457 at 463.611 kb on - strand, within HP15_457 at 464.109 kb on + strand, within HP15_458 at 464.109 kb on + strand, within HP15_458 at 464.117 kb on - strand, within HP15_458 at 464.117 kb on - strand, within HP15_458 at 464.172 kb on + strand, within HP15_458 at 464.312 kb on + strand, within HP15_458 at 464.363 kb on + strand, within HP15_458 at 464.426 kb on + strand, within HP15_458 at 464.521 kb on - strand, within HP15_458 at 464.541 kb on - strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.662 kb on - strand, within HP15_458 at 464.677 kb on - strand, within HP15_458 at 464.677 kb on - strand, within HP15_458 at 464.758 kb on - strand, within HP15_458 at 464.764 kb on - strand, within HP15_458 at 464.800 kb on - strand, within HP15_458 at 464.845 kb on + strand at 464.900 kb on + strand at 464.921 kb on - strand at 465.233 kb on - strand, within HP15_459 at 465.233 kb on - strand, within HP15_459 at 465.436 kb on - strand at 465.612 kb on + strand at 465.703 kb on - strand, within HP15_460 at 465.703 kb on - strand, within HP15_460 at 465.715 kb on - strand, within HP15_460 at 465.743 kb on - strand, within HP15_460 at 465.758 kb on - strand, within HP15_460 at 465.758 kb on - strand, within HP15_460
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 463,202 + HP15_457 0.70 -1.5 463,202 + HP15_457 0.70 -1.8 463,210 - HP15_457 0.70 -1.1 463,210 - HP15_457 0.70 -2.0 463,232 - HP15_457 0.71 -0.5 463,258 + HP15_457 0.72 -0.7 463,331 - HP15_457 0.75 +0.2 463,341 + HP15_457 0.76 +0.4 463,439 - HP15_457 0.80 -0.9 463,603 + HP15_457 0.87 -1.8 463,611 - HP15_457 0.87 -0.4 464,109 + HP15_458 0.10 +0.6 464,109 + HP15_458 0.10 -0.4 464,117 - HP15_458 0.11 -0.9 464,117 - HP15_458 0.11 -0.9 464,172 + HP15_458 0.18 +0.2 464,312 + HP15_458 0.33 -1.0 464,363 + HP15_458 0.39 -0.6 464,426 + HP15_458 0.46 -1.4 464,521 - HP15_458 0.57 -2.0 464,541 - HP15_458 0.59 -0.4 464,552 + HP15_458 0.60 -0.6 464,552 + HP15_458 0.60 -1.3 464,552 + HP15_458 0.60 -2.1 464,662 - HP15_458 0.73 +0.2 464,677 - HP15_458 0.74 -0.4 464,677 - HP15_458 0.74 -0.5 464,758 - HP15_458 0.83 -0.4 464,764 - HP15_458 0.84 -0.7 464,800 - HP15_458 0.88 -0.6 464,845 + -1.9 464,900 + -0.0 464,921 - +0.1 465,233 - HP15_459 0.71 +0.7 465,233 - HP15_459 0.71 -1.1 465,436 - -0.4 465,612 + -0.1 465,703 - HP15_460 0.14 -0.4 465,703 - HP15_460 0.14 +0.6 465,715 - HP15_460 0.15 +0.2 465,743 - HP15_460 0.18 -0.3 465,758 - HP15_460 0.19 +0.4 465,758 - HP15_460 0.19 -0.4
Or see this region's nucleotide sequence