Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3015 and HP15_3016 are separated by 75 nucleotides HP15_3016 and HP15_tRNA48 are separated by 121 nucleotides
HP15_3015: HP15_3015 - A/G-specific adenine glycosylase-like protein, at 3,160,078 to 3,161,145
_3015
HP15_3016: HP15_3016 - Ion traffic superfamily protein, at 3,161,221 to 3,161,493
_3016
HP15_tRNA48: HP15_tRNA48 - tRNA-Phe, at 3,161,615 to 3,161,690
_tRNA48
Position (kb)
3161
3162 Strain fitness (log2 ratio)
-1
0
1 at 3160.259 kb on + strand, within HP15_3015 at 3160.312 kb on - strand, within HP15_3015 at 3160.431 kb on + strand, within HP15_3015 at 3160.460 kb on - strand, within HP15_3015 at 3160.494 kb on + strand, within HP15_3015 at 3160.597 kb on - strand, within HP15_3015 at 3160.610 kb on + strand, within HP15_3015 at 3160.618 kb on - strand, within HP15_3015 at 3160.711 kb on - strand, within HP15_3015 at 3160.728 kb on - strand, within HP15_3015 at 3160.730 kb on + strand, within HP15_3015 at 3160.883 kb on + strand, within HP15_3015 at 3160.997 kb on - strand, within HP15_3015 at 3160.997 kb on - strand, within HP15_3015 at 3161.142 kb on - strand at 3161.266 kb on + strand, within HP15_3016 at 3161.274 kb on - strand, within HP15_3016 at 3161.281 kb on + strand, within HP15_3016 at 3161.299 kb on + strand, within HP15_3016 at 3161.398 kb on - strand, within HP15_3016 at 3161.460 kb on - strand, within HP15_3016 at 3161.511 kb on - strand at 3161.753 kb on - strand at 3161.797 kb on - strand at 3161.899 kb on + strand at 3161.982 kb on + strand at 3162.086 kb on - strand at 3162.236 kb on - strand at 3162.236 kb on - strand at 3162.247 kb on + strand at 3162.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 3,160,259 + HP15_3015 0.17 +0.2 3,160,312 - HP15_3015 0.22 -0.3 3,160,431 + HP15_3015 0.33 +0.3 3,160,460 - HP15_3015 0.36 -1.4 3,160,494 + HP15_3015 0.39 +0.3 3,160,597 - HP15_3015 0.49 -0.0 3,160,610 + HP15_3015 0.50 +0.1 3,160,618 - HP15_3015 0.51 -0.5 3,160,711 - HP15_3015 0.59 +0.1 3,160,728 - HP15_3015 0.61 +0.1 3,160,730 + HP15_3015 0.61 +0.4 3,160,883 + HP15_3015 0.75 +0.3 3,160,997 - HP15_3015 0.86 -0.0 3,160,997 - HP15_3015 0.86 +0.3 3,161,142 - -1.0 3,161,266 + HP15_3016 0.16 -0.1 3,161,274 - HP15_3016 0.19 -0.4 3,161,281 + HP15_3016 0.22 -1.5 3,161,299 + HP15_3016 0.29 -0.4 3,161,398 - HP15_3016 0.65 -0.1 3,161,460 - HP15_3016 0.88 -0.4 3,161,511 - +0.7 3,161,753 - -0.5 3,161,797 - +0.1 3,161,899 + +0.4 3,161,982 + +0.3 3,162,086 - +1.3 3,162,236 - +0.1 3,162,236 - -0.0 3,162,247 + -1.5 3,162,416 - +0.9
Or see this region's nucleotide sequence