Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2913 and HP15_2914 are separated by 235 nucleotides HP15_2914 and HP15_2915 are separated by 149 nucleotides
HP15_2913: HP15_2913 - bacterial transketolase, at 3,050,685 to 3,052,685
_2913
HP15_2914: HP15_2914 - protein containing Methyltransferase type 11 domain, at 3,052,921 to 3,053,922
_2914
HP15_2915: HP15_2915 - S-adenosylmethionine synthetase, at 3,054,072 to 3,055,262
_2915
Position (kb)
3052
3053
3054 Strain fitness (log2 ratio)
-2
-1
0
1 at 3053.019 kb on - strand at 3053.112 kb on + strand, within HP15_2914 at 3053.112 kb on + strand, within HP15_2914 at 3053.112 kb on + strand, within HP15_2914 at 3053.291 kb on + strand, within HP15_2914 at 3053.296 kb on + strand, within HP15_2914 at 3053.301 kb on + strand, within HP15_2914 at 3053.392 kb on + strand, within HP15_2914 at 3053.529 kb on + strand, within HP15_2914 at 3053.529 kb on + strand, within HP15_2914 at 3053.529 kb on + strand, within HP15_2914 at 3053.552 kb on - strand, within HP15_2914 at 3053.588 kb on - strand, within HP15_2914 at 3053.607 kb on + strand, within HP15_2914 at 3053.610 kb on - strand, within HP15_2914 at 3053.661 kb on + strand, within HP15_2914 at 3053.703 kb on - strand, within HP15_2914 at 3053.733 kb on + strand, within HP15_2914 at 3053.736 kb on + strand, within HP15_2914 at 3053.744 kb on - strand, within HP15_2914 at 3053.751 kb on + strand, within HP15_2914 at 3053.765 kb on - strand, within HP15_2914 at 3053.789 kb on + strand, within HP15_2914 at 3053.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 3,053,019 - -2.3 3,053,112 + HP15_2914 0.19 -0.0 3,053,112 + HP15_2914 0.19 -0.2 3,053,112 + HP15_2914 0.19 +0.5 3,053,291 + HP15_2914 0.37 +0.0 3,053,296 + HP15_2914 0.37 +0.1 3,053,301 + HP15_2914 0.38 -1.0 3,053,392 + HP15_2914 0.47 +0.3 3,053,529 + HP15_2914 0.61 -0.2 3,053,529 + HP15_2914 0.61 +0.2 3,053,529 + HP15_2914 0.61 +0.4 3,053,552 - HP15_2914 0.63 -0.9 3,053,588 - HP15_2914 0.67 -1.5 3,053,607 + HP15_2914 0.68 +0.1 3,053,610 - HP15_2914 0.69 -2.2 3,053,661 + HP15_2914 0.74 -0.3 3,053,703 - HP15_2914 0.78 -1.7 3,053,733 + HP15_2914 0.81 +0.3 3,053,736 + HP15_2914 0.81 +1.2 3,053,744 - HP15_2914 0.82 -2.1 3,053,751 + HP15_2914 0.83 +0.2 3,053,765 - HP15_2914 0.84 -0.3 3,053,789 + HP15_2914 0.87 +0.4 3,053,853 - -1.8
Or see this region's nucleotide sequence