Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2899 and HP15_2900 are separated by 132 nucleotides HP15_2900 and HP15_2901 are separated by 126 nucleotides HP15_2901 and HP15_2902 overlap by 4 nucleotides
HP15_2899: HP15_2899 - rhodanese sulfurtransferase, at 3,035,584 to 3,036,606
_2899
HP15_2900: HP15_2900 - DSBA oxidoreductase, at 3,036,739 to 3,037,470
_2900
HP15_2901: HP15_2901 - 2-nitropropane dioxygenase NPD, at 3,037,597 to 3,038,571
_2901
HP15_2902: HP15_2902 - methyl-accepting chemotaxis protein, at 3,038,568 to 3,040,508
_2902
Position (kb)
3037
3038
3039 Strain fitness (log2 ratio)
-1
0
1 at 3036.643 kb on + strand at 3036.727 kb on + strand at 3036.884 kb on + strand, within HP15_2900 at 3037.139 kb on + strand, within HP15_2900 at 3037.159 kb on - strand, within HP15_2900 at 3037.561 kb on - strand at 3037.756 kb on - strand, within HP15_2901 at 3037.853 kb on + strand, within HP15_2901 at 3037.885 kb on - strand, within HP15_2901 at 3038.124 kb on - strand, within HP15_2901 at 3038.146 kb on + strand, within HP15_2901 at 3038.154 kb on - strand, within HP15_2901 at 3038.159 kb on - strand, within HP15_2901 at 3038.184 kb on - strand, within HP15_2901 at 3038.202 kb on - strand, within HP15_2901 at 3038.276 kb on - strand, within HP15_2901 at 3038.276 kb on - strand, within HP15_2901 at 3038.344 kb on - strand, within HP15_2901 at 3038.380 kb on - strand, within HP15_2901 at 3038.486 kb on - strand at 3038.508 kb on + strand at 3038.653 kb on - strand at 3038.701 kb on - strand at 3038.701 kb on - strand at 3038.721 kb on + strand at 3038.729 kb on - strand at 3038.749 kb on + strand at 3038.757 kb on - strand at 3038.896 kb on - strand, within HP15_2902 at 3038.950 kb on + strand, within HP15_2902 at 3038.950 kb on + strand, within HP15_2902 at 3038.979 kb on + strand, within HP15_2902 at 3039.178 kb on - strand, within HP15_2902 at 3039.262 kb on + strand, within HP15_2902 at 3039.286 kb on + strand, within HP15_2902 at 3039.316 kb on - strand, within HP15_2902 at 3039.326 kb on - strand, within HP15_2902 at 3039.358 kb on + strand, within HP15_2902 at 3039.520 kb on + strand, within HP15_2902 at 3039.547 kb on + strand, within HP15_2902
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 3,036,643 + +0.1 3,036,727 + +0.8 3,036,884 + HP15_2900 0.20 -1.4 3,037,139 + HP15_2900 0.55 +0.4 3,037,159 - HP15_2900 0.57 +0.4 3,037,561 - -0.2 3,037,756 - HP15_2901 0.16 +0.1 3,037,853 + HP15_2901 0.26 +0.4 3,037,885 - HP15_2901 0.30 -0.1 3,038,124 - HP15_2901 0.54 -0.1 3,038,146 + HP15_2901 0.56 -0.8 3,038,154 - HP15_2901 0.57 +0.3 3,038,159 - HP15_2901 0.58 -0.1 3,038,184 - HP15_2901 0.60 +0.1 3,038,202 - HP15_2901 0.62 +0.3 3,038,276 - HP15_2901 0.70 -0.1 3,038,276 - HP15_2901 0.70 -1.5 3,038,344 - HP15_2901 0.77 +0.0 3,038,380 - HP15_2901 0.80 -0.8 3,038,486 - -0.3 3,038,508 + +0.2 3,038,653 - -0.3 3,038,701 - -0.2 3,038,701 - -0.2 3,038,721 + +0.2 3,038,729 - +0.5 3,038,749 + -0.2 3,038,757 - -0.1 3,038,896 - HP15_2902 0.17 +0.4 3,038,950 + HP15_2902 0.20 +0.2 3,038,950 + HP15_2902 0.20 +0.2 3,038,979 + HP15_2902 0.21 +0.0 3,039,178 - HP15_2902 0.31 +0.0 3,039,262 + HP15_2902 0.36 +0.1 3,039,286 + HP15_2902 0.37 +0.2 3,039,316 - HP15_2902 0.39 -0.2 3,039,326 - HP15_2902 0.39 -0.3 3,039,358 + HP15_2902 0.41 -0.4 3,039,520 + HP15_2902 0.49 +0.1 3,039,547 + HP15_2902 0.50 +0.5
Or see this region's nucleotide sequence