Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2475 and HP15_2476 are separated by 102 nucleotides HP15_2476 and HP15_2477 are separated by 244 nucleotides HP15_2477 and HP15_2478 are separated by 89 nucleotides
HP15_2475: HP15_2475 - DNA polymerase III, delta subunit, at 2,615,702 to 2,616,709
_2475
HP15_2476: HP15_2476 - conserved hypothetical protein, at 2,616,812 to 2,617,084
_2476
HP15_2477: HP15_2477 - endonuclease I, at 2,617,329 to 2,617,907
_2477
HP15_2478: HP15_2478 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) , at 2,617,997 to 2,619,757
_2478
Position (kb)
2616
2617
2618 Strain fitness (log2 ratio)
-1
0
1 at 2616.739 kb on + strand at 2616.756 kb on - strand at 2616.847 kb on - strand, within HP15_2476 at 2616.904 kb on - strand, within HP15_2476 at 2617.031 kb on - strand, within HP15_2476 at 2617.087 kb on + strand at 2617.095 kb on - strand at 2617.299 kb on + strand at 2617.307 kb on - strand at 2617.326 kb on - strand at 2617.382 kb on + strand at 2617.390 kb on - strand, within HP15_2477 at 2617.424 kb on + strand, within HP15_2477 at 2617.500 kb on + strand, within HP15_2477 at 2617.525 kb on + strand, within HP15_2477 at 2617.578 kb on + strand, within HP15_2477 at 2617.730 kb on + strand, within HP15_2477 at 2617.747 kb on + strand, within HP15_2477 at 2617.755 kb on - strand, within HP15_2477 at 2617.788 kb on + strand, within HP15_2477 at 2617.788 kb on + strand, within HP15_2477 at 2617.798 kb on + strand, within HP15_2477 at 2617.806 kb on - strand, within HP15_2477 at 2617.806 kb on - strand, within HP15_2477 at 2617.908 kb on - strand at 2618.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,616,739 + -0.2 2,616,756 - +0.9 2,616,847 - HP15_2476 0.13 +0.0 2,616,904 - HP15_2476 0.34 -1.5 2,617,031 - HP15_2476 0.80 -0.8 2,617,087 + -0.4 2,617,095 - -0.5 2,617,299 + -0.4 2,617,307 - -0.4 2,617,326 - -1.4 2,617,382 + -0.7 2,617,390 - HP15_2477 0.11 -0.1 2,617,424 + HP15_2477 0.16 +0.1 2,617,500 + HP15_2477 0.30 +0.9 2,617,525 + HP15_2477 0.34 -0.0 2,617,578 + HP15_2477 0.43 +0.1 2,617,730 + HP15_2477 0.69 +1.6 2,617,747 + HP15_2477 0.72 -0.4 2,617,755 - HP15_2477 0.74 +0.8 2,617,788 + HP15_2477 0.79 +0.5 2,617,788 + HP15_2477 0.79 -0.4 2,617,798 + HP15_2477 0.81 +0.3 2,617,806 - HP15_2477 0.82 +0.2 2,617,806 - HP15_2477 0.82 -0.0 2,617,908 - +1.0 2,618,013 - +0.4
Or see this region's nucleotide sequence