Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2399 and HP15_2400 are separated by 87 nucleotides HP15_2400 and HP15_2401 overlap by 1 nucleotides
HP15_2399: HP15_2399 - polysaccharide biosynthesis protein CapD, at 2,531,010 to 2,531,942
_2399
HP15_2400: HP15_2400 - lipopolysaccharide biosynthesis protein, at 2,532,030 to 2,532,995
_2400
HP15_2401: HP15_2401 - polysaccharide biosynthesis/export protein, at 2,532,995 to 2,535,532
_2401
Position (kb)
2532
2533 Strain fitness (log2 ratio)
-2
-1
0
1 at 2532.136 kb on + strand, within HP15_2400 at 2532.173 kb on + strand, within HP15_2400 at 2532.173 kb on + strand, within HP15_2400 at 2532.269 kb on - strand, within HP15_2400 at 2532.534 kb on + strand, within HP15_2400 at 2532.534 kb on + strand, within HP15_2400 at 2532.604 kb on + strand, within HP15_2400 at 2532.631 kb on - strand, within HP15_2400 at 2532.666 kb on + strand, within HP15_2400 at 2532.795 kb on + strand, within HP15_2400 at 2532.803 kb on - strand, within HP15_2400 at 2532.805 kb on + strand, within HP15_2400 at 2532.926 kb on + strand at 2532.954 kb on - strand at 2533.041 kb on + strand at 2533.051 kb on + strand at 2533.219 kb on + strand at 2533.317 kb on - strand, within HP15_2401 at 2533.441 kb on - strand, within HP15_2401 at 2533.660 kb on + strand, within HP15_2401 at 2533.680 kb on - strand, within HP15_2401 at 2533.692 kb on + strand, within HP15_2401 at 2533.749 kb on + strand, within HP15_2401 at 2533.766 kb on + strand, within HP15_2401
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,532,136 + HP15_2400 0.11 -0.8 2,532,173 + HP15_2400 0.15 -1.7 2,532,173 + HP15_2400 0.15 -1.4 2,532,269 - HP15_2400 0.25 +0.6 2,532,534 + HP15_2400 0.52 -1.0 2,532,534 + HP15_2400 0.52 -1.4 2,532,604 + HP15_2400 0.59 -2.0 2,532,631 - HP15_2400 0.62 -0.7 2,532,666 + HP15_2400 0.66 -2.7 2,532,795 + HP15_2400 0.79 -1.1 2,532,803 - HP15_2400 0.80 -0.8 2,532,805 + HP15_2400 0.80 -1.4 2,532,926 + -0.7 2,532,954 - +0.0 2,533,041 + -0.8 2,533,051 + -0.8 2,533,219 + -1.0 2,533,317 - HP15_2401 0.13 -1.0 2,533,441 - HP15_2401 0.18 -0.5 2,533,660 + HP15_2401 0.26 -2.1 2,533,680 - HP15_2401 0.27 -0.3 2,533,692 + HP15_2401 0.27 -2.4 2,533,749 + HP15_2401 0.30 -1.5 2,533,766 + HP15_2401 0.30 -1.3
Or see this region's nucleotide sequence