Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2355 and HP15_2356 overlap by 10 nucleotides HP15_2356 and HP15_2357 are separated by 1 nucleotides HP15_2357 and HP15_2358 are separated by 133 nucleotides
HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162
_2355
HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004
_2356
HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797
_2357
HP15_2358: HP15_2358 - chaperonin GroEL, at 2,483,931 to 2,485,538
_2358
Position (kb)
2483
2484 Strain fitness (log2 ratio)
-2
-1
0
1 at 2482.017 kb on - strand at 2482.098 kb on + strand at 2482.223 kb on + strand at 2482.264 kb on - strand, within HP15_2356 at 2482.331 kb on + strand, within HP15_2356 at 2482.331 kb on + strand, within HP15_2356 at 2482.400 kb on - strand, within HP15_2356 at 2482.499 kb on + strand, within HP15_2356 at 2482.529 kb on + strand, within HP15_2356 at 2482.617 kb on + strand, within HP15_2356 at 2482.861 kb on + strand, within HP15_2356 at 2482.988 kb on + strand at 2483.081 kb on - strand at 2483.339 kb on - strand, within HP15_2357 at 2483.345 kb on - strand, within HP15_2357 at 2483.348 kb on - strand, within HP15_2357 at 2483.412 kb on - strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.467 kb on + strand, within HP15_2357 at 2483.657 kb on - strand, within HP15_2357 at 2483.774 kb on + strand at 2483.774 kb on + strand at 2483.775 kb on + strand at 2483.809 kb on - strand at 2483.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,482,017 - -0.3 2,482,098 + -0.5 2,482,223 + -0.5 2,482,264 - HP15_2356 0.13 -0.2 2,482,331 + HP15_2356 0.21 +0.4 2,482,331 + HP15_2356 0.21 -0.5 2,482,400 - HP15_2356 0.29 -0.7 2,482,499 + HP15_2356 0.41 -0.8 2,482,529 + HP15_2356 0.44 +0.2 2,482,617 + HP15_2356 0.54 -0.4 2,482,861 + HP15_2356 0.83 -1.3 2,482,988 + +0.4 2,483,081 - -0.8 2,483,339 - HP15_2357 0.42 +0.2 2,483,345 - HP15_2357 0.43 -0.1 2,483,348 - HP15_2357 0.43 -0.5 2,483,412 - HP15_2357 0.51 -0.4 2,483,443 + HP15_2357 0.55 -0.2 2,483,443 + HP15_2357 0.55 -0.7 2,483,467 + HP15_2357 0.58 -0.9 2,483,657 - HP15_2357 0.82 +0.9 2,483,774 + +0.6 2,483,774 + -2.4 2,483,775 + -0.5 2,483,809 - -1.6 2,483,928 + -0.4
Or see this region's nucleotide sequence