Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2091 and HP15_2092 are separated by 211 nucleotides HP15_2092 and HP15_2093 are separated by 53 nucleotides
HP15_2091: HP15_2091 - transcriptional regulator, LysR family protein, at 2,189,219 to 2,190,253
_2091
HP15_2092: HP15_2092 - conserved hypothetical protein, at 2,190,465 to 2,191,232
_2092
HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613
_2093
Position (kb)
2190
2191
2192 Strain fitness (log2 ratio)
-2
-1
0
1 at 2189.592 kb on + strand, within HP15_2091 at 2189.592 kb on + strand, within HP15_2091 at 2189.592 kb on + strand, within HP15_2091 at 2189.625 kb on - strand, within HP15_2091 at 2189.692 kb on - strand, within HP15_2091 at 2189.850 kb on - strand, within HP15_2091 at 2189.850 kb on - strand, within HP15_2091 at 2189.945 kb on + strand, within HP15_2091 at 2189.967 kb on + strand, within HP15_2091 at 2190.038 kb on + strand, within HP15_2091 at 2190.081 kb on + strand, within HP15_2091 at 2190.089 kb on - strand, within HP15_2091 at 2190.089 kb on - strand, within HP15_2091 at 2190.130 kb on + strand, within HP15_2091 at 2190.138 kb on - strand, within HP15_2091 at 2190.203 kb on + strand at 2190.206 kb on - strand at 2190.274 kb on + strand at 2190.602 kb on - strand, within HP15_2092 at 2190.633 kb on + strand, within HP15_2092 at 2190.660 kb on - strand, within HP15_2092 at 2190.696 kb on + strand, within HP15_2092 at 2190.733 kb on - strand, within HP15_2092 at 2190.942 kb on + strand, within HP15_2092 at 2191.022 kb on - strand, within HP15_2092 at 2191.236 kb on - strand at 2191.314 kb on + strand at 2191.322 kb on - strand at 2191.379 kb on - strand at 2191.596 kb on + strand, within HP15_2093 at 2191.599 kb on - strand, within HP15_2093 at 2191.619 kb on - strand, within HP15_2093 at 2191.671 kb on - strand, within HP15_2093 at 2191.787 kb on + strand, within HP15_2093 at 2191.788 kb on + strand, within HP15_2093 at 2191.808 kb on - strand, within HP15_2093 at 2191.897 kb on + strand, within HP15_2093 at 2191.937 kb on + strand, within HP15_2093 at 2192.048 kb on - strand, within HP15_2093 at 2192.119 kb on + strand, within HP15_2093 at 2192.119 kb on + strand, within HP15_2093 at 2192.127 kb on - strand, within HP15_2093
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,189,592 + HP15_2091 0.36 +0.1 2,189,592 + HP15_2091 0.36 -1.0 2,189,592 + HP15_2091 0.36 -0.1 2,189,625 - HP15_2091 0.39 -0.2 2,189,692 - HP15_2091 0.46 -0.7 2,189,850 - HP15_2091 0.61 +0.7 2,189,850 - HP15_2091 0.61 +0.1 2,189,945 + HP15_2091 0.70 +0.5 2,189,967 + HP15_2091 0.72 +0.5 2,190,038 + HP15_2091 0.79 -0.9 2,190,081 + HP15_2091 0.83 +0.3 2,190,089 - HP15_2091 0.84 -0.6 2,190,089 - HP15_2091 0.84 -0.5 2,190,130 + HP15_2091 0.88 +0.3 2,190,138 - HP15_2091 0.89 +0.8 2,190,203 + -1.1 2,190,206 - +0.2 2,190,274 + +0.1 2,190,602 - HP15_2092 0.18 +0.2 2,190,633 + HP15_2092 0.22 -1.1 2,190,660 - HP15_2092 0.25 -0.1 2,190,696 + HP15_2092 0.30 -0.9 2,190,733 - HP15_2092 0.35 -0.6 2,190,942 + HP15_2092 0.62 -2.0 2,191,022 - HP15_2092 0.73 -0.9 2,191,236 - +0.6 2,191,314 + -0.6 2,191,322 - +0.1 2,191,379 - -0.7 2,191,596 + HP15_2093 0.13 +0.2 2,191,599 - HP15_2093 0.13 -0.4 2,191,619 - HP15_2093 0.14 -0.1 2,191,671 - HP15_2093 0.17 +0.2 2,191,787 + HP15_2093 0.22 -0.3 2,191,788 + HP15_2093 0.22 +0.1 2,191,808 - HP15_2093 0.22 +0.5 2,191,897 + HP15_2093 0.26 -0.4 2,191,937 + HP15_2093 0.28 +0.3 2,192,048 - HP15_2093 0.33 -0.2 2,192,119 + HP15_2093 0.36 -1.4 2,192,119 + HP15_2093 0.36 -2.0 2,192,127 - HP15_2093 0.36 -0.3
Or see this region's nucleotide sequence