Strain Fitness in Marinobacter adhaerens HP15 around HP15_1775

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1773 and HP15_1774 overlap by 4 nucleotidesHP15_1774 and HP15_1775 are separated by 23 nucleotidesHP15_1775 and HP15_1776 are separated by 81 nucleotidesHP15_1776 and HP15_1777 are separated by 18 nucleotides HP15_1773: HP15_1773 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,870,279 to 1,871,553 _1773 HP15_1774: HP15_1774 - conserved hypothetical protein, membrane, at 1,871,550 to 1,872,071 _1774 HP15_1775: HP15_1775 - conserved hypothetical protein, at 1,872,095 to 1,872,808 _1775 HP15_1776: HP15_1776 - exonuclease III, at 1,872,890 to 1,873,702 _1776 HP15_1777: HP15_1777 - transcriptional regulator, TetR family, at 1,873,721 to 1,874,350 _1777 Position (kb) 1872 1873Strain fitness (log2 ratio) -1 0 1at 1871.136 kb on + strand, within HP15_1773at 1871.148 kb on + strand, within HP15_1773at 1871.148 kb on + strand, within HP15_1773at 1871.156 kb on - strand, within HP15_1773at 1871.156 kb on - strand, within HP15_1773at 1871.168 kb on + strand, within HP15_1773at 1871.172 kb on + strand, within HP15_1773at 1871.175 kb on - strand, within HP15_1773at 1871.258 kb on + strand, within HP15_1773at 1871.484 kb on + strandat 1871.530 kb on + strandat 1871.806 kb on - strand, within HP15_1774at 1872.006 kb on - strand, within HP15_1774at 1872.221 kb on + strand, within HP15_1775at 1872.378 kb on - strand, within HP15_1775at 1872.620 kb on + strand, within HP15_1775at 1872.698 kb on - strand, within HP15_1775at 1873.080 kb on + strand, within HP15_1776at 1873.139 kb on + strand, within HP15_1776at 1873.172 kb on + strand, within HP15_1776at 1873.280 kb on + strand, within HP15_1776at 1873.336 kb on - strand, within HP15_1776at 1873.532 kb on - strand, within HP15_1776at 1873.558 kb on + strand, within HP15_1776at 1873.580 kb on + strand, within HP15_1776at 1873.600 kb on - strand, within HP15_1776at 1873.631 kb on - strandat 1873.771 kb on + strandat 1873.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,871,136 + HP15_1773 0.67 +0.3
1,871,148 + HP15_1773 0.68 -0.2
1,871,148 + HP15_1773 0.68 -0.0
1,871,156 - HP15_1773 0.69 +0.4
1,871,156 - HP15_1773 0.69 -0.1
1,871,168 + HP15_1773 0.70 +0.1
1,871,172 + HP15_1773 0.70 -0.9
1,871,175 - HP15_1773 0.70 -0.0
1,871,258 + HP15_1773 0.77 +0.3
1,871,484 + -0.3
1,871,530 + +1.2
1,871,806 - HP15_1774 0.49 +0.6
1,872,006 - HP15_1774 0.87 -0.0
1,872,221 + HP15_1775 0.18 -0.2
1,872,378 - HP15_1775 0.40 -1.1
1,872,620 + HP15_1775 0.74 -0.6
1,872,698 - HP15_1775 0.84 -0.3
1,873,080 + HP15_1776 0.23 +0.1
1,873,139 + HP15_1776 0.31 -0.1
1,873,172 + HP15_1776 0.35 +0.6
1,873,280 + HP15_1776 0.48 -1.5
1,873,336 - HP15_1776 0.55 -0.2
1,873,532 - HP15_1776 0.79 +0.2
1,873,558 + HP15_1776 0.82 +0.6
1,873,580 + HP15_1776 0.85 +0.1
1,873,600 - HP15_1776 0.87 -0.1
1,873,631 - -0.0
1,873,771 + -0.7
1,873,779 - +0.4

Or see this region's nucleotide sequence