Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1294 and HP15_1295 overlap by 4 nucleotides HP15_1295 and HP15_1296 are separated by 74 nucleotides HP15_1296 and HP15_1297 overlap by 4 nucleotides HP15_1297 and HP15_1298 are separated by 72 nucleotides
HP15_1294: HP15_1294 - deoxycytidine triphosphate deaminase, at 1,355,289 to 1,355,855
_1294
HP15_1295: HP15_1295 - protein containing DUF416, at 1,355,852 to 1,356,451
_1295
HP15_1296: HP15_1296 - valine-pyruvate transaminase, at 1,356,526 to 1,357,803
_1296
HP15_1297: HP15_1297 - conserved hypothetical protein, secreted, at 1,357,800 to 1,358,552
_1297
HP15_1298: HP15_1298 - phosphoribosylglycinamide formyltransferase, at 1,358,625 to 1,359,287
_1298
Position (kb)
1356
1357
1358 Strain fitness (log2 ratio)
-1
0
1 at 1356.161 kb on + strand, within HP15_1295 at 1356.180 kb on + strand, within HP15_1295 at 1356.188 kb on - strand, within HP15_1295 at 1356.427 kb on + strand at 1356.460 kb on - strand at 1356.490 kb on - strand at 1356.496 kb on + strand at 1356.501 kb on + strand at 1356.602 kb on - strand at 1356.664 kb on + strand, within HP15_1296 at 1356.973 kb on + strand, within HP15_1296 at 1356.978 kb on + strand, within HP15_1296 at 1356.981 kb on - strand, within HP15_1296 at 1356.986 kb on - strand, within HP15_1296 at 1357.531 kb on + strand, within HP15_1296 at 1357.534 kb on - strand, within HP15_1296 at 1357.764 kb on + strand at 1357.764 kb on + strand at 1357.764 kb on + strand at 1357.764 kb on + strand at 1357.772 kb on - strand at 1357.772 kb on - strand at 1357.772 kb on - strand at 1357.804 kb on + strand at 1358.248 kb on + strand, within HP15_1297 at 1358.256 kb on - strand, within HP15_1297 at 1358.338 kb on + strand, within HP15_1297 at 1358.599 kb on - strand at 1358.733 kb on - strand, within HP15_1298
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,356,161 + HP15_1295 0.52 +0.2 1,356,180 + HP15_1295 0.55 +0.1 1,356,188 - HP15_1295 0.56 -0.6 1,356,427 + -0.1 1,356,460 - -0.2 1,356,490 - -0.4 1,356,496 + +0.1 1,356,501 + +0.2 1,356,602 - +0.2 1,356,664 + HP15_1296 0.11 +0.3 1,356,973 + HP15_1296 0.35 +0.3 1,356,978 + HP15_1296 0.35 -1.6 1,356,981 - HP15_1296 0.36 -0.4 1,356,986 - HP15_1296 0.36 +0.5 1,357,531 + HP15_1296 0.79 -1.4 1,357,534 - HP15_1296 0.79 -0.4 1,357,764 + -0.4 1,357,764 + -1.2 1,357,764 + +0.3 1,357,764 + +0.2 1,357,772 - +0.4 1,357,772 - -0.0 1,357,772 - -0.9 1,357,804 + +0.5 1,358,248 + HP15_1297 0.59 -1.4 1,358,256 - HP15_1297 0.61 -0.2 1,358,338 + HP15_1297 0.71 -1.1 1,358,599 - -0.4 1,358,733 - HP15_1298 0.16 -1.0
Or see this region's nucleotide sequence