Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1086 and HP15_1087 are separated by 285 nucleotides HP15_1087 and HP15_1088 are separated by 277 nucleotides HP15_1088 and HP15_1089 are separated by 141 nucleotides
HP15_1086: HP15_1086 - hypothetical protein, at 1,114,009 to 1,114,248
_1086
HP15_1087: HP15_1087 - prophage CP4-57 regulatory, at 1,114,534 to 1,114,761
_1087
HP15_1088: HP15_1088 - conserved hypothetical protein, membrane, at 1,115,039 to 1,115,383
_1088
HP15_1089: HP15_1089 - conserved hypothetical protein, at 1,115,525 to 1,116,487
_1089
Position (kb)
1115
1116 Strain fitness (log2 ratio)
-1
0
1 at 1114.051 kb on - strand, within HP15_1086 at 1114.061 kb on - strand, within HP15_1086 at 1114.372 kb on - strand at 1114.501 kb on + strand at 1114.501 kb on - strand at 1114.541 kb on + strand at 1114.610 kb on - strand, within HP15_1087 at 1114.658 kb on - strand, within HP15_1087 at 1114.660 kb on + strand, within HP15_1087 at 1114.872 kb on - strand at 1115.216 kb on - strand, within HP15_1088 at 1115.249 kb on + strand, within HP15_1088 at 1115.259 kb on - strand, within HP15_1088 at 1115.288 kb on - strand, within HP15_1088 at 1115.433 kb on + strand at 1115.433 kb on + strand at 1115.566 kb on - strand at 1115.633 kb on + strand, within HP15_1089 at 1115.666 kb on - strand, within HP15_1089 at 1115.666 kb on - strand, within HP15_1089 at 1115.734 kb on - strand, within HP15_1089 at 1115.743 kb on + strand, within HP15_1089 at 1115.793 kb on - strand, within HP15_1089 at 1115.793 kb on - strand, within HP15_1089 at 1115.863 kb on + strand, within HP15_1089 at 1115.893 kb on + strand, within HP15_1089 at 1115.893 kb on + strand, within HP15_1089 at 1115.930 kb on + strand, within HP15_1089 at 1115.951 kb on - strand, within HP15_1089 at 1115.980 kb on + strand, within HP15_1089 at 1115.981 kb on - strand, within HP15_1089 at 1115.988 kb on - strand, within HP15_1089 at 1115.995 kb on + strand, within HP15_1089 at 1115.995 kb on + strand, within HP15_1089 at 1116.024 kb on - strand, within HP15_1089 at 1116.081 kb on + strand, within HP15_1089 at 1116.084 kb on - strand, within HP15_1089 at 1116.190 kb on - strand, within HP15_1089 at 1116.210 kb on + strand, within HP15_1089 at 1116.278 kb on + strand, within HP15_1089 at 1116.286 kb on - strand, within HP15_1089 at 1116.315 kb on + strand, within HP15_1089 at 1116.357 kb on - strand, within HP15_1089 at 1116.372 kb on - strand, within HP15_1089
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,114,051 - HP15_1086 0.17 +0.9 1,114,061 - HP15_1086 0.22 -0.2 1,114,372 - +1.5 1,114,501 + +1.0 1,114,501 - -0.0 1,114,541 + -1.2 1,114,610 - HP15_1087 0.33 +0.2 1,114,658 - HP15_1087 0.54 -0.4 1,114,660 + HP15_1087 0.55 +0.4 1,114,872 - -0.3 1,115,216 - HP15_1088 0.51 +0.3 1,115,249 + HP15_1088 0.61 +0.6 1,115,259 - HP15_1088 0.64 -1.0 1,115,288 - HP15_1088 0.72 -0.6 1,115,433 + -0.2 1,115,433 + +0.5 1,115,566 - +1.5 1,115,633 + HP15_1089 0.11 +0.3 1,115,666 - HP15_1089 0.15 -0.6 1,115,666 - HP15_1089 0.15 -0.2 1,115,734 - HP15_1089 0.22 +0.8 1,115,743 + HP15_1089 0.23 +0.8 1,115,793 - HP15_1089 0.28 +0.1 1,115,793 - HP15_1089 0.28 -0.2 1,115,863 + HP15_1089 0.35 +0.2 1,115,893 + HP15_1089 0.38 -0.9 1,115,893 + HP15_1089 0.38 -0.2 1,115,930 + HP15_1089 0.42 +1.2 1,115,951 - HP15_1089 0.44 +0.4 1,115,980 + HP15_1089 0.47 -1.4 1,115,981 - HP15_1089 0.47 +0.3 1,115,988 - HP15_1089 0.48 +0.6 1,115,995 + HP15_1089 0.49 -0.1 1,115,995 + HP15_1089 0.49 +0.8 1,116,024 - HP15_1089 0.52 -0.2 1,116,081 + HP15_1089 0.58 -0.1 1,116,084 - HP15_1089 0.58 +0.5 1,116,190 - HP15_1089 0.69 +0.2 1,116,210 + HP15_1089 0.71 -0.7 1,116,278 + HP15_1089 0.78 +0.3 1,116,286 - HP15_1089 0.79 +0.4 1,116,315 + HP15_1089 0.82 -0.1 1,116,357 - HP15_1089 0.86 -0.1 1,116,372 - HP15_1089 0.88 -0.4
Or see this region's nucleotide sequence