Strain Fitness in Marinobacter adhaerens HP15 around HP15_1088

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1086 and HP15_1087 are separated by 285 nucleotidesHP15_1087 and HP15_1088 are separated by 277 nucleotidesHP15_1088 and HP15_1089 are separated by 141 nucleotides HP15_1086: HP15_1086 - hypothetical protein, at 1,114,009 to 1,114,248 _1086 HP15_1087: HP15_1087 - prophage CP4-57 regulatory, at 1,114,534 to 1,114,761 _1087 HP15_1088: HP15_1088 - conserved hypothetical protein, membrane, at 1,115,039 to 1,115,383 _1088 HP15_1089: HP15_1089 - conserved hypothetical protein, at 1,115,525 to 1,116,487 _1089 Position (kb) 1115 1116Strain fitness (log2 ratio) -1 0 1at 1114.051 kb on - strand, within HP15_1086at 1114.061 kb on - strand, within HP15_1086at 1114.372 kb on - strandat 1114.501 kb on + strandat 1114.501 kb on - strandat 1114.541 kb on + strandat 1114.610 kb on - strand, within HP15_1087at 1114.658 kb on - strand, within HP15_1087at 1114.660 kb on + strand, within HP15_1087at 1114.872 kb on - strandat 1115.216 kb on - strand, within HP15_1088at 1115.249 kb on + strand, within HP15_1088at 1115.259 kb on - strand, within HP15_1088at 1115.288 kb on - strand, within HP15_1088at 1115.433 kb on + strandat 1115.433 kb on + strandat 1115.566 kb on - strandat 1115.633 kb on + strand, within HP15_1089at 1115.666 kb on - strand, within HP15_1089at 1115.666 kb on - strand, within HP15_1089at 1115.734 kb on - strand, within HP15_1089at 1115.743 kb on + strand, within HP15_1089at 1115.793 kb on - strand, within HP15_1089at 1115.793 kb on - strand, within HP15_1089at 1115.863 kb on + strand, within HP15_1089at 1115.893 kb on + strand, within HP15_1089at 1115.893 kb on + strand, within HP15_1089at 1115.930 kb on + strand, within HP15_1089at 1115.951 kb on - strand, within HP15_1089at 1115.980 kb on + strand, within HP15_1089at 1115.981 kb on - strand, within HP15_1089at 1115.988 kb on - strand, within HP15_1089at 1115.995 kb on + strand, within HP15_1089at 1115.995 kb on + strand, within HP15_1089at 1116.024 kb on - strand, within HP15_1089at 1116.081 kb on + strand, within HP15_1089at 1116.084 kb on - strand, within HP15_1089at 1116.190 kb on - strand, within HP15_1089at 1116.210 kb on + strand, within HP15_1089at 1116.278 kb on + strand, within HP15_1089at 1116.286 kb on - strand, within HP15_1089at 1116.315 kb on + strand, within HP15_1089at 1116.357 kb on - strand, within HP15_1089at 1116.372 kb on - strand, within HP15_1089

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,114,051 - HP15_1086 0.17 +0.9
1,114,061 - HP15_1086 0.22 -0.2
1,114,372 - +1.5
1,114,501 + +1.0
1,114,501 - -0.0
1,114,541 + -1.2
1,114,610 - HP15_1087 0.33 +0.2
1,114,658 - HP15_1087 0.54 -0.4
1,114,660 + HP15_1087 0.55 +0.4
1,114,872 - -0.3
1,115,216 - HP15_1088 0.51 +0.3
1,115,249 + HP15_1088 0.61 +0.6
1,115,259 - HP15_1088 0.64 -1.0
1,115,288 - HP15_1088 0.72 -0.6
1,115,433 + -0.2
1,115,433 + +0.5
1,115,566 - +1.5
1,115,633 + HP15_1089 0.11 +0.3
1,115,666 - HP15_1089 0.15 -0.6
1,115,666 - HP15_1089 0.15 -0.2
1,115,734 - HP15_1089 0.22 +0.8
1,115,743 + HP15_1089 0.23 +0.8
1,115,793 - HP15_1089 0.28 +0.1
1,115,793 - HP15_1089 0.28 -0.2
1,115,863 + HP15_1089 0.35 +0.2
1,115,893 + HP15_1089 0.38 -0.9
1,115,893 + HP15_1089 0.38 -0.2
1,115,930 + HP15_1089 0.42 +1.2
1,115,951 - HP15_1089 0.44 +0.4
1,115,980 + HP15_1089 0.47 -1.4
1,115,981 - HP15_1089 0.47 +0.3
1,115,988 - HP15_1089 0.48 +0.6
1,115,995 + HP15_1089 0.49 -0.1
1,115,995 + HP15_1089 0.49 +0.8
1,116,024 - HP15_1089 0.52 -0.2
1,116,081 + HP15_1089 0.58 -0.1
1,116,084 - HP15_1089 0.58 +0.5
1,116,190 - HP15_1089 0.69 +0.2
1,116,210 + HP15_1089 0.71 -0.7
1,116,278 + HP15_1089 0.78 +0.3
1,116,286 - HP15_1089 0.79 +0.4
1,116,315 + HP15_1089 0.82 -0.1
1,116,357 - HP15_1089 0.86 -0.1
1,116,372 - HP15_1089 0.88 -0.4

Or see this region's nucleotide sequence