Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1054 and HP15_1055 overlap by 4 nucleotides HP15_1055 and HP15_1056 are separated by 195 nucleotides
HP15_1054: HP15_1054 - multi-sensor signal transduction histidine kinase, at 1,075,525 to 1,077,102
_1054
HP15_1055: HP15_1055 - MaoC domain protein, at 1,077,099 to 1,077,925
_1055
HP15_1056: HP15_1056 - transcriptional regulator, AraC family protein, at 1,078,121 to 1,079,290
_1056
Position (kb)
1077
1078 Strain fitness (log2 ratio)
-1
0
1 at 1076.204 kb on + strand, within HP15_1054 at 1076.503 kb on - strand, within HP15_1054 at 1077.043 kb on + strand at 1077.105 kb on - strand at 1077.152 kb on + strand at 1077.165 kb on - strand at 1077.364 kb on - strand, within HP15_1055 at 1077.371 kb on - strand, within HP15_1055 at 1077.661 kb on + strand, within HP15_1055 at 1077.713 kb on - strand, within HP15_1055 at 1077.795 kb on + strand, within HP15_1055 at 1077.821 kb on - strand, within HP15_1055 at 1077.984 kb on - strand at 1078.085 kb on - strand at 1078.087 kb on + strand at 1078.153 kb on + strand at 1078.153 kb on + strand at 1078.153 kb on + strand at 1078.161 kb on - strand at 1078.161 kb on - strand at 1078.404 kb on + strand, within HP15_1056 at 1078.417 kb on - strand, within HP15_1056 at 1078.527 kb on + strand, within HP15_1056 at 1078.527 kb on + strand, within HP15_1056 at 1078.626 kb on + strand, within HP15_1056 at 1078.639 kb on - strand, within HP15_1056 at 1078.683 kb on + strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056 at 1078.804 kb on - strand, within HP15_1056
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,076,204 + HP15_1054 0.43 -0.8 1,076,503 - HP15_1054 0.62 -0.4 1,077,043 + -1.1 1,077,105 - +0.3 1,077,152 + -0.6 1,077,165 - +1.4 1,077,364 - HP15_1055 0.32 -0.5 1,077,371 - HP15_1055 0.33 -0.3 1,077,661 + HP15_1055 0.68 -0.1 1,077,713 - HP15_1055 0.74 -0.6 1,077,795 + HP15_1055 0.84 -0.5 1,077,821 - HP15_1055 0.87 -0.2 1,077,984 - -0.3 1,078,085 - +0.5 1,078,087 + -0.3 1,078,153 + -0.9 1,078,153 + -0.0 1,078,153 + -1.2 1,078,161 - -0.5 1,078,161 - -0.4 1,078,404 + HP15_1056 0.24 -0.7 1,078,417 - HP15_1056 0.25 +0.3 1,078,527 + HP15_1056 0.35 -0.4 1,078,527 + HP15_1056 0.35 -0.1 1,078,626 + HP15_1056 0.43 +0.4 1,078,639 - HP15_1056 0.44 -0.0 1,078,683 + HP15_1056 0.48 -0.1 1,078,804 - HP15_1056 0.58 -0.1 1,078,804 - HP15_1056 0.58 +0.5 1,078,804 - HP15_1056 0.58 +0.2 1,078,804 - HP15_1056 0.58 -0.1
Or see this region's nucleotide sequence