Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03861

Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03859 and CCNA_03860 are separated by 73 nucleotidesCCNA_03860 and CCNA_03861 overlap by 4 nucleotidesCCNA_03861 and CCNA_03862 are separated by 12 nucleotidesCCNA_03862 and CCNA_03863 are separated by 6 nucleotides CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952 _03859 CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535 _03860 CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185 _03861 CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818 _03862 CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235 _03863 Position (kb) 4023 4024 4025Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4022.560 kb on - strand, within CCNA_03859at 4022.577 kb on + strand, within CCNA_03859at 4022.585 kb on - strand, within CCNA_03859at 4022.585 kb on - strand, within CCNA_03859at 4022.595 kb on - strand, within CCNA_03859at 4022.605 kb on - strand, within CCNA_03859at 4022.608 kb on + strand, within CCNA_03859at 4022.676 kb on - strand, within CCNA_03859at 4022.768 kb on + strand, within CCNA_03859at 4022.778 kb on + strand, within CCNA_03859at 4022.831 kb on + strand, within CCNA_03859at 4022.868 kb on + strand, within CCNA_03859at 4022.887 kb on - strandat 4022.928 kb on + strandat 4022.962 kb on - strandat 4022.976 kb on - strandat 4022.978 kb on + strandat 4022.984 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.008 kb on + strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.089 kb on + strandat 4023.105 kb on - strand, within CCNA_03860at 4023.105 kb on - strand, within CCNA_03860at 4023.126 kb on - strand, within CCNA_03860at 4023.138 kb on + strand, within CCNA_03860at 4023.203 kb on + strand, within CCNA_03860at 4023.215 kb on + strand, within CCNA_03860at 4023.216 kb on + strand, within CCNA_03860at 4023.223 kb on - strand, within CCNA_03860at 4023.242 kb on + strand, within CCNA_03860at 4023.261 kb on - strand, within CCNA_03860at 4023.268 kb on - strand, within CCNA_03860at 4023.330 kb on - strand, within CCNA_03860at 4023.341 kb on + strand, within CCNA_03860at 4023.341 kb on + strand, within CCNA_03860at 4023.341 kb on + strand, within CCNA_03860at 4023.349 kb on - strand, within CCNA_03860at 4023.349 kb on - strand, within CCNA_03860at 4023.349 kb on - strand, within CCNA_03860at 4023.349 kb on - strand, within CCNA_03860at 4023.356 kb on - strand, within CCNA_03860at 4023.458 kb on + strand, within CCNA_03860at 4023.461 kb on - strand, within CCNA_03860at 4023.466 kb on - strand, within CCNA_03860at 4023.483 kb on - strand, within CCNA_03860at 4023.493 kb on - strandat 4023.581 kb on - strandat 4023.637 kb on + strand, within CCNA_03861at 4023.679 kb on + strand, within CCNA_03861at 4023.687 kb on - strand, within CCNA_03861at 4023.823 kb on - strand, within CCNA_03861at 4023.825 kb on + strand, within CCNA_03861at 4023.827 kb on + strand, within CCNA_03861at 4023.827 kb on + strand, within CCNA_03861at 4023.827 kb on + strand, within CCNA_03861at 4023.833 kb on - strand, within CCNA_03861at 4023.956 kb on + strand, within CCNA_03861at 4023.964 kb on - strand, within CCNA_03861at 4023.972 kb on + strand, within CCNA_03861at 4023.993 kb on + strand, within CCNA_03861at 4024.042 kb on - strand, within CCNA_03861at 4024.071 kb on + strand, within CCNA_03861at 4024.085 kb on + strand, within CCNA_03861at 4024.085 kb on + strand, within CCNA_03861at 4024.085 kb on + strand, within CCNA_03861at 4024.093 kb on - strand, within CCNA_03861at 4024.135 kb on + strandat 4024.143 kb on - strandat 4024.195 kb on + strandat 4024.195 kb on + strandat 4024.195 kb on + strandat 4024.203 kb on - strandat 4024.203 kb on - strandat 4024.214 kb on + strandat 4024.244 kb on - strandat 4024.806 kb on - strandat 4024.978 kb on - strand, within CCNA_03863at 4025.150 kb on + strand, within CCNA_03863at 4025.150 kb on + strand, within CCNA_03863at 4025.150 kb on + strand, within CCNA_03863at 4025.158 kb on - strand, within CCNA_03863at 4025.158 kb on - strand, within CCNA_03863at 4025.158 kb on - strand, within CCNA_03863

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Per-strain Table

Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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4,022,560 - CCNA_03859 0.43 -2.8
4,022,577 + CCNA_03859 0.45 +2.4
4,022,585 - CCNA_03859 0.46 -2.6
4,022,585 - CCNA_03859 0.46 -2.7
4,022,595 - CCNA_03859 0.48 -2.2
4,022,605 - CCNA_03859 0.49 -1.5
4,022,608 + CCNA_03859 0.50 -0.6
4,022,676 - CCNA_03859 0.60 -1.4
4,022,768 + CCNA_03859 0.73 +0.1
4,022,778 + CCNA_03859 0.75 -2.4
4,022,831 + CCNA_03859 0.82 -1.2
4,022,868 + CCNA_03859 0.88 -1.8
4,022,887 - +0.4
4,022,928 + -1.1
4,022,962 - -0.3
4,022,976 - -2.2
4,022,978 + -0.5
4,022,984 + +0.1
4,023,001 + +0.8
4,023,001 + -0.6
4,023,001 + -0.5
4,023,001 + +0.0
4,023,001 + +0.3
4,023,001 + -0.1
4,023,008 + -0.4
4,023,009 - -0.4
4,023,009 - -0.1
4,023,009 - -0.3
4,023,009 - -0.4
4,023,009 - -0.2
4,023,009 - +0.0
4,023,089 + +0.2
4,023,105 - CCNA_03860 0.15 +0.3
4,023,105 - CCNA_03860 0.15 -1.8
4,023,126 - CCNA_03860 0.20 -0.9
4,023,138 + CCNA_03860 0.22 +0.0
4,023,203 + CCNA_03860 0.35 -0.3
4,023,215 + CCNA_03860 0.37 +0.1
4,023,216 + CCNA_03860 0.37 -2.5
4,023,223 - CCNA_03860 0.39 +0.4
4,023,242 + CCNA_03860 0.42 -0.2
4,023,261 - CCNA_03860 0.46 -0.4
4,023,268 - CCNA_03860 0.47 -0.2
4,023,330 - CCNA_03860 0.60 +0.0
4,023,341 + CCNA_03860 0.62 +0.4
4,023,341 + CCNA_03860 0.62 +0.2
4,023,341 + CCNA_03860 0.62 +0.4
4,023,349 - CCNA_03860 0.63 +0.0
4,023,349 - CCNA_03860 0.63 -0.1
4,023,349 - CCNA_03860 0.63 -0.9
4,023,349 - CCNA_03860 0.63 -0.5
4,023,356 - CCNA_03860 0.65 -0.8
4,023,458 + CCNA_03860 0.85 -1.7
4,023,461 - CCNA_03860 0.85 +0.6
4,023,466 - CCNA_03860 0.86 -1.1
4,023,483 - CCNA_03860 0.90 -1.0
4,023,493 - +0.9
4,023,581 - -1.9
4,023,637 + CCNA_03861 0.16 -1.9
4,023,679 + CCNA_03861 0.22 -2.4
4,023,687 - CCNA_03861 0.24 -2.2
4,023,823 - CCNA_03861 0.44 -2.8
4,023,825 + CCNA_03861 0.45 -1.2
4,023,827 + CCNA_03861 0.45 +0.8
4,023,827 + CCNA_03861 0.45 -3.3
4,023,827 + CCNA_03861 0.45 -3.8
4,023,833 - CCNA_03861 0.46 -1.6
4,023,956 + CCNA_03861 0.65 -2.7
4,023,964 - CCNA_03861 0.66 -0.2
4,023,972 + CCNA_03861 0.67 -1.9
4,023,993 + CCNA_03861 0.70 -1.8
4,024,042 - CCNA_03861 0.78 -0.8
4,024,071 + CCNA_03861 0.82 -1.2
4,024,085 + CCNA_03861 0.85 -2.4
4,024,085 + CCNA_03861 0.85 -1.9
4,024,085 + CCNA_03861 0.85 -3.1
4,024,093 - CCNA_03861 0.86 -1.2
4,024,135 + -1.1
4,024,143 - -1.9
4,024,195 + -0.5
4,024,195 + +0.1
4,024,195 + -0.4
4,024,203 - -1.1
4,024,203 - +0.5
4,024,214 + -0.3
4,024,244 - +1.0
4,024,806 - -0.1
4,024,978 - CCNA_03863 0.37 -0.8
4,025,150 + CCNA_03863 0.79 -1.3
4,025,150 + CCNA_03863 0.79 -2.3
4,025,150 + CCNA_03863 0.79 +0.1
4,025,158 - CCNA_03863 0.81 -0.8
4,025,158 - CCNA_03863 0.81 -0.9
4,025,158 - CCNA_03863 0.81 -0.9

Or see this region's nucleotide sequence