Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02587

Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02586 and CCNA_02587 are separated by 26 nucleotidesCCNA_02587 and CCNA_02588 are separated by 119 nucleotides CCNA_02586: CCNA_02586 - phosphoribosylformylglycinamidine synthase II, at 2,734,094 to 2,736,313 _02586 CCNA_02587: CCNA_02587 - PAS-family sensor histidine kinase, at 2,736,340 to 2,738,157 _02587 CCNA_02588: CCNA_02588 - aminopeptidase, at 2,738,277 to 2,739,206 _02588 Position (kb) 2736 2737 2738 2739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2735.394 kb on + strandat 2735.450 kb on + strand, within CCNA_02586at 2735.453 kb on - strand, within CCNA_02586at 2735.465 kb on + strand, within CCNA_02586at 2735.481 kb on - strand, within CCNA_02586at 2735.490 kb on + strand, within CCNA_02586at 2735.562 kb on + strand, within CCNA_02586at 2735.627 kb on + strand, within CCNA_02586at 2735.658 kb on - strand, within CCNA_02586at 2735.760 kb on + strand, within CCNA_02586at 2735.778 kb on + strand, within CCNA_02586at 2735.786 kb on - strand, within CCNA_02586at 2735.795 kb on + strand, within CCNA_02586at 2735.795 kb on + strand, within CCNA_02586at 2735.823 kb on + strand, within CCNA_02586at 2735.823 kb on + strand, within CCNA_02586at 2735.852 kb on + strand, within CCNA_02586at 2735.889 kb on + strand, within CCNA_02586at 2735.957 kb on + strand, within CCNA_02586at 2736.043 kb on - strand, within CCNA_02586at 2736.068 kb on - strand, within CCNA_02586at 2736.074 kb on + strand, within CCNA_02586at 2736.093 kb on + strandat 2736.110 kb on + strandat 2736.238 kb on - strandat 2736.276 kb on - strandat 2736.315 kb on + strandat 2736.323 kb on - strandat 2736.323 kb on - strandat 2736.338 kb on + strandat 2736.346 kb on - strandat 2736.348 kb on + strandat 2736.365 kb on - strandat 2736.395 kb on + strandat 2736.442 kb on - strandat 2736.458 kb on + strandat 2736.466 kb on - strandat 2736.577 kb on - strand, within CCNA_02587at 2736.625 kb on + strand, within CCNA_02587at 2736.668 kb on + strand, within CCNA_02587at 2736.681 kb on - strand, within CCNA_02587at 2736.692 kb on + strand, within CCNA_02587at 2736.697 kb on + strand, within CCNA_02587at 2736.705 kb on - strand, within CCNA_02587at 2736.705 kb on - strand, within CCNA_02587at 2736.715 kb on + strand, within CCNA_02587at 2736.811 kb on + strand, within CCNA_02587at 2736.883 kb on + strand, within CCNA_02587at 2736.883 kb on + strand, within CCNA_02587at 2736.883 kb on + strand, within CCNA_02587at 2736.883 kb on + strand, within CCNA_02587at 2736.883 kb on + strand, within CCNA_02587at 2736.883 kb on + strand, within CCNA_02587at 2736.886 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.891 kb on - strand, within CCNA_02587at 2736.934 kb on - strand, within CCNA_02587at 2736.947 kb on - strand, within CCNA_02587at 2736.960 kb on + strand, within CCNA_02587at 2736.973 kb on + strand, within CCNA_02587at 2736.981 kb on - strand, within CCNA_02587at 2737.090 kb on + strand, within CCNA_02587at 2737.105 kb on + strand, within CCNA_02587at 2737.105 kb on + strand, within CCNA_02587at 2737.110 kb on + strand, within CCNA_02587at 2737.172 kb on + strand, within CCNA_02587at 2737.172 kb on + strand, within CCNA_02587at 2737.172 kb on + strand, within CCNA_02587at 2737.178 kb on + strand, within CCNA_02587at 2737.180 kb on - strand, within CCNA_02587at 2737.180 kb on - strand, within CCNA_02587at 2737.210 kb on + strand, within CCNA_02587at 2737.251 kb on + strand, within CCNA_02587at 2737.265 kb on + strand, within CCNA_02587at 2737.273 kb on - strand, within CCNA_02587at 2737.292 kb on + strand, within CCNA_02587at 2737.314 kb on - strand, within CCNA_02587at 2737.324 kb on + strand, within CCNA_02587at 2737.329 kb on + strand, within CCNA_02587at 2737.329 kb on + strand, within CCNA_02587at 2737.337 kb on - strand, within CCNA_02587at 2737.378 kb on + strand, within CCNA_02587at 2737.378 kb on + strand, within CCNA_02587at 2737.397 kb on - strand, within CCNA_02587at 2737.498 kb on - strand, within CCNA_02587at 2737.509 kb on - strand, within CCNA_02587at 2737.575 kb on - strand, within CCNA_02587at 2737.577 kb on + strand, within CCNA_02587at 2737.580 kb on - strand, within CCNA_02587at 2737.580 kb on - strand, within CCNA_02587at 2737.580 kb on - strand, within CCNA_02587at 2737.586 kb on - strand, within CCNA_02587at 2737.592 kb on + strand, within CCNA_02587at 2737.600 kb on - strand, within CCNA_02587at 2737.610 kb on + strand, within CCNA_02587at 2737.610 kb on + strand, within CCNA_02587at 2737.610 kb on + strand, within CCNA_02587at 2737.618 kb on - strand, within CCNA_02587at 2737.618 kb on - strand, within CCNA_02587at 2737.620 kb on + strand, within CCNA_02587at 2737.634 kb on + strand, within CCNA_02587at 2737.656 kb on + strand, within CCNA_02587at 2737.656 kb on + strand, within CCNA_02587at 2737.656 kb on + strand, within CCNA_02587at 2737.656 kb on + strand, within CCNA_02587at 2737.656 kb on + strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.664 kb on - strand, within CCNA_02587at 2737.677 kb on - strand, within CCNA_02587at 2737.727 kb on + strand, within CCNA_02587at 2737.727 kb on + strand, within CCNA_02587at 2737.735 kb on - strand, within CCNA_02587at 2737.744 kb on + strand, within CCNA_02587at 2737.759 kb on - strand, within CCNA_02587at 2737.761 kb on + strand, within CCNA_02587at 2737.778 kb on + strand, within CCNA_02587at 2737.778 kb on + strand, within CCNA_02587at 2737.778 kb on + strand, within CCNA_02587at 2737.778 kb on + strand, within CCNA_02587at 2737.786 kb on - strand, within CCNA_02587at 2737.786 kb on - strand, within CCNA_02587at 2737.786 kb on - strand, within CCNA_02587at 2737.792 kb on + strand, within CCNA_02587at 2737.839 kb on + strand, within CCNA_02587at 2737.862 kb on + strand, within CCNA_02587at 2737.878 kb on - strand, within CCNA_02587at 2737.919 kb on + strand, within CCNA_02587at 2737.925 kb on + strand, within CCNA_02587at 2737.925 kb on + strand, within CCNA_02587at 2737.925 kb on + strand, within CCNA_02587at 2737.925 kb on + strand, within CCNA_02587at 2737.925 kb on + strand, within CCNA_02587at 2737.933 kb on - strand, within CCNA_02587at 2737.933 kb on - strand, within CCNA_02587at 2737.933 kb on - strand, within CCNA_02587at 2737.933 kb on - strand, within CCNA_02587at 2737.933 kb on - strand, within CCNA_02587at 2737.940 kb on - strand, within CCNA_02587at 2737.946 kb on + strand, within CCNA_02587at 2738.050 kb on - strandat 2738.053 kb on - strandat 2738.069 kb on + strandat 2738.069 kb on + strandat 2738.097 kb on + strandat 2738.097 kb on + strandat 2738.097 kb on + strandat 2738.097 kb on + strandat 2738.105 kb on - strandat 2738.120 kb on + strandat 2738.120 kb on + strandat 2738.120 kb on + strandat 2738.128 kb on - strandat 2738.128 kb on - strandat 2738.173 kb on - strandat 2738.201 kb on + strandat 2738.209 kb on - strandat 2738.257 kb on - strandat 2738.269 kb on - strandat 2738.300 kb on - strandat 2738.334 kb on - strandat 2738.339 kb on - strandat 2738.341 kb on + strandat 2738.344 kb on - strandat 2738.344 kb on - strandat 2738.362 kb on + strandat 2738.370 kb on - strand, within CCNA_02588at 2738.388 kb on + strand, within CCNA_02588at 2738.403 kb on + strand, within CCNA_02588at 2738.411 kb on - strand, within CCNA_02588at 2738.418 kb on + strand, within CCNA_02588at 2738.421 kb on - strand, within CCNA_02588at 2738.421 kb on - strand, within CCNA_02588at 2738.493 kb on + strand, within CCNA_02588at 2738.493 kb on + strand, within CCNA_02588at 2738.493 kb on - strand, within CCNA_02588at 2738.509 kb on + strand, within CCNA_02588at 2738.665 kb on - strand, within CCNA_02588at 2738.723 kb on + strand, within CCNA_02588at 2738.728 kb on + strand, within CCNA_02588at 2738.729 kb on - strand, within CCNA_02588at 2738.736 kb on - strand, within CCNA_02588at 2738.747 kb on + strand, within CCNA_02588at 2738.763 kb on - strand, within CCNA_02588at 2738.824 kb on - strand, within CCNA_02588at 2738.840 kb on - strand, within CCNA_02588at 2738.840 kb on - strand, within CCNA_02588at 2738.840 kb on - strand, within CCNA_02588at 2738.892 kb on - strand, within CCNA_02588at 2738.892 kb on - strand, within CCNA_02588at 2738.892 kb on - strand, within CCNA_02588at 2738.913 kb on + strand, within CCNA_02588at 2738.916 kb on - strand, within CCNA_02588at 2738.975 kb on - strand, within CCNA_02588at 2738.986 kb on - strand, within CCNA_02588at 2739.144 kb on - strandat 2739.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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2,735,394 + -0.2
2,735,450 + CCNA_02586 0.61 -2.8
2,735,453 - CCNA_02586 0.61 -2.2
2,735,465 + CCNA_02586 0.62 -3.7
2,735,481 - CCNA_02586 0.62 -1.8
2,735,490 + CCNA_02586 0.63 -3.8
2,735,562 + CCNA_02586 0.66 -0.2
2,735,627 + CCNA_02586 0.69 -1.4
2,735,658 - CCNA_02586 0.70 -1.7
2,735,760 + CCNA_02586 0.75 -1.6
2,735,778 + CCNA_02586 0.76 -3.4
2,735,786 - CCNA_02586 0.76 -1.8
2,735,795 + CCNA_02586 0.77 -3.2
2,735,795 + CCNA_02586 0.77 -3.0
2,735,823 + CCNA_02586 0.78 -1.9
2,735,823 + CCNA_02586 0.78 -1.9
2,735,852 + CCNA_02586 0.79 -2.2
2,735,889 + CCNA_02586 0.81 -3.0
2,735,957 + CCNA_02586 0.84 -3.8
2,736,043 - CCNA_02586 0.88 -2.5
2,736,068 - CCNA_02586 0.89 -2.1
2,736,074 + CCNA_02586 0.89 -0.2
2,736,093 + -0.4
2,736,110 + +1.4
2,736,238 - -2.1
2,736,276 - -1.3
2,736,315 + +1.0
2,736,323 - +2.0
2,736,323 - +0.9
2,736,338 + +0.9
2,736,346 - -1.5
2,736,348 + -0.3
2,736,365 - -0.4
2,736,395 + +1.0
2,736,442 - +0.2
2,736,458 + +0.2
2,736,466 - +0.8
2,736,577 - CCNA_02587 0.13 +0.5
2,736,625 + CCNA_02587 0.16 +0.2
2,736,668 + CCNA_02587 0.18 +0.2
2,736,681 - CCNA_02587 0.19 +0.3
2,736,692 + CCNA_02587 0.19 +0.1
2,736,697 + CCNA_02587 0.20 -0.3
2,736,705 - CCNA_02587 0.20 +0.0
2,736,705 - CCNA_02587 0.20 -0.2
2,736,715 + CCNA_02587 0.21 +0.1
2,736,811 + CCNA_02587 0.26 +1.4
2,736,883 + CCNA_02587 0.30 -1.1
2,736,883 + CCNA_02587 0.30 -0.4
2,736,883 + CCNA_02587 0.30 -0.3
2,736,883 + CCNA_02587 0.30 +0.6
2,736,883 + CCNA_02587 0.30 -0.1
2,736,883 + CCNA_02587 0.30 -0.9
2,736,886 - CCNA_02587 0.30 -0.4
2,736,891 - CCNA_02587 0.30 -0.2
2,736,891 - CCNA_02587 0.30 +0.1
2,736,891 - CCNA_02587 0.30 +0.3
2,736,891 - CCNA_02587 0.30 +0.2
2,736,891 - CCNA_02587 0.30 +0.1
2,736,891 - CCNA_02587 0.30 +0.5
2,736,891 - CCNA_02587 0.30 +0.2
2,736,891 - CCNA_02587 0.30 -0.3
2,736,891 - CCNA_02587 0.30 +0.3
2,736,891 - CCNA_02587 0.30 -0.2
2,736,891 - CCNA_02587 0.30 -1.3
2,736,934 - CCNA_02587 0.33 +0.2
2,736,947 - CCNA_02587 0.33 +0.9
2,736,960 + CCNA_02587 0.34 -1.3
2,736,973 + CCNA_02587 0.35 -2.0
2,736,981 - CCNA_02587 0.35 +0.1
2,737,090 + CCNA_02587 0.41 -0.8
2,737,105 + CCNA_02587 0.42 -0.3
2,737,105 + CCNA_02587 0.42 -0.4
2,737,110 + CCNA_02587 0.42 -0.5
2,737,172 + CCNA_02587 0.46 -1.1
2,737,172 + CCNA_02587 0.46 -0.5
2,737,172 + CCNA_02587 0.46 -3.1
2,737,178 + CCNA_02587 0.46 -1.3
2,737,180 - CCNA_02587 0.46 +0.3
2,737,180 - CCNA_02587 0.46 +0.8
2,737,210 + CCNA_02587 0.48 -0.8
2,737,251 + CCNA_02587 0.50 -1.5
2,737,265 + CCNA_02587 0.51 +0.8
2,737,273 - CCNA_02587 0.51 -0.7
2,737,292 + CCNA_02587 0.52 -1.1
2,737,314 - CCNA_02587 0.54 -0.4
2,737,324 + CCNA_02587 0.54 +0.1
2,737,329 + CCNA_02587 0.54 +3.1
2,737,329 + CCNA_02587 0.54 +0.1
2,737,337 - CCNA_02587 0.55 +0.4
2,737,378 + CCNA_02587 0.57 +0.5
2,737,378 + CCNA_02587 0.57 -0.7
2,737,397 - CCNA_02587 0.58 -0.0
2,737,498 - CCNA_02587 0.64 -0.1
2,737,509 - CCNA_02587 0.64 +0.3
2,737,575 - CCNA_02587 0.68 -0.9
2,737,577 + CCNA_02587 0.68 +0.6
2,737,580 - CCNA_02587 0.68 +0.5
2,737,580 - CCNA_02587 0.68 -1.6
2,737,580 - CCNA_02587 0.68 +0.1
2,737,586 - CCNA_02587 0.69 +0.1
2,737,592 + CCNA_02587 0.69 -1.1
2,737,600 - CCNA_02587 0.69 +0.3
2,737,610 + CCNA_02587 0.70 +0.7
2,737,610 + CCNA_02587 0.70 +1.2
2,737,610 + CCNA_02587 0.70 +0.4
2,737,618 - CCNA_02587 0.70 +0.0
2,737,618 - CCNA_02587 0.70 +1.2
2,737,620 + CCNA_02587 0.70 -0.7
2,737,634 + CCNA_02587 0.71 -0.2
2,737,656 + CCNA_02587 0.72 -0.1
2,737,656 + CCNA_02587 0.72 +0.0
2,737,656 + CCNA_02587 0.72 +1.2
2,737,656 + CCNA_02587 0.72 +0.6
2,737,656 + CCNA_02587 0.72 +0.6
2,737,664 - CCNA_02587 0.73 -0.6
2,737,664 - CCNA_02587 0.73 -0.2
2,737,664 - CCNA_02587 0.73 +0.0
2,737,664 - CCNA_02587 0.73 +0.1
2,737,664 - CCNA_02587 0.73 +0.7
2,737,664 - CCNA_02587 0.73 -0.2
2,737,664 - CCNA_02587 0.73 +0.8
2,737,664 - CCNA_02587 0.73 +0.1
2,737,664 - CCNA_02587 0.73 +0.4
2,737,664 - CCNA_02587 0.73 +0.0
2,737,677 - CCNA_02587 0.74 +0.3
2,737,727 + CCNA_02587 0.76 +0.2
2,737,727 + CCNA_02587 0.76 +0.4
2,737,735 - CCNA_02587 0.77 +0.5
2,737,744 + CCNA_02587 0.77 +0.1
2,737,759 - CCNA_02587 0.78 +0.1
2,737,761 + CCNA_02587 0.78 -0.0
2,737,778 + CCNA_02587 0.79 +0.7
2,737,778 + CCNA_02587 0.79 +0.8
2,737,778 + CCNA_02587 0.79 -0.4
2,737,778 + CCNA_02587 0.79 +0.6
2,737,786 - CCNA_02587 0.80 +0.4
2,737,786 - CCNA_02587 0.80 -0.0
2,737,786 - CCNA_02587 0.80 -0.0
2,737,792 + CCNA_02587 0.80 -0.1
2,737,839 + CCNA_02587 0.82 -0.3
2,737,862 + CCNA_02587 0.84 -0.0
2,737,878 - CCNA_02587 0.85 +1.1
2,737,919 + CCNA_02587 0.87 +1.2
2,737,925 + CCNA_02587 0.87 -0.5
2,737,925 + CCNA_02587 0.87 -1.4
2,737,925 + CCNA_02587 0.87 -2.4
2,737,925 + CCNA_02587 0.87 +0.9
2,737,925 + CCNA_02587 0.87 +0.3
2,737,933 - CCNA_02587 0.88 -0.4
2,737,933 - CCNA_02587 0.88 -0.2
2,737,933 - CCNA_02587 0.88 -0.1
2,737,933 - CCNA_02587 0.88 +0.3
2,737,933 - CCNA_02587 0.88 +1.3
2,737,940 - CCNA_02587 0.88 +0.2
2,737,946 + CCNA_02587 0.88 -2.5
2,738,050 - +0.3
2,738,053 - +0.3
2,738,069 + -0.2
2,738,069 + -0.5
2,738,097 + -0.4
2,738,097 + -0.4
2,738,097 + -1.6
2,738,097 + -0.7
2,738,105 - +0.6
2,738,120 + +0.2
2,738,120 + -1.5
2,738,120 + +0.2
2,738,128 - +0.6
2,738,128 - +0.7
2,738,173 - -0.0
2,738,201 + +0.1
2,738,209 - +0.4
2,738,257 - -0.0
2,738,269 - +0.7
2,738,300 - +0.4
2,738,334 - +0.2
2,738,339 - -0.5
2,738,341 + -0.1
2,738,344 - +0.4
2,738,344 - -0.5
2,738,362 + +0.4
2,738,370 - CCNA_02588 0.10 +0.2
2,738,388 + CCNA_02588 0.12 -0.4
2,738,403 + CCNA_02588 0.14 -1.3
2,738,411 - CCNA_02588 0.14 +0.2
2,738,418 + CCNA_02588 0.15 -0.1
2,738,421 - CCNA_02588 0.15 +0.3
2,738,421 - CCNA_02588 0.15 +0.3
2,738,493 + CCNA_02588 0.23 -0.7
2,738,493 + CCNA_02588 0.23 +0.6
2,738,493 - CCNA_02588 0.23 -0.1
2,738,509 + CCNA_02588 0.25 -1.0
2,738,665 - CCNA_02588 0.42 +0.4
2,738,723 + CCNA_02588 0.48 +0.0
2,738,728 + CCNA_02588 0.48 +0.4
2,738,729 - CCNA_02588 0.49 -0.0
2,738,736 - CCNA_02588 0.49 -0.3
2,738,747 + CCNA_02588 0.51 -0.2
2,738,763 - CCNA_02588 0.52 +0.2
2,738,824 - CCNA_02588 0.59 +0.1
2,738,840 - CCNA_02588 0.61 +0.2
2,738,840 - CCNA_02588 0.61 +0.3
2,738,840 - CCNA_02588 0.61 +0.1
2,738,892 - CCNA_02588 0.66 +0.2
2,738,892 - CCNA_02588 0.66 +0.4
2,738,892 - CCNA_02588 0.66 +0.8
2,738,913 + CCNA_02588 0.68 +0.6
2,738,916 - CCNA_02588 0.69 -1.0
2,738,975 - CCNA_02588 0.75 -0.2
2,738,986 - CCNA_02588 0.76 +0.7
2,739,144 - +0.8
2,739,149 - +0.2

Or see this region's nucleotide sequence