Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27735

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS27730 and BWI76_RS27735 are separated by 209 nucleotidesBWI76_RS27735 and BWI76_RS27740 are separated by 20 nucleotides BWI76_RS27730: BWI76_RS27730 - ISNCY family transposase, at 5,754,980 to 5,755,933 _RS27730 BWI76_RS27735: BWI76_RS27735 - hypothetical protein, at 5,756,143 to 5,756,436 _RS27735 BWI76_RS27740: BWI76_RS27740 - LacI family transcriptional regulator, at 5,756,457 to 5,757,398 _RS27740 Position (kb) 5756 5757Strain fitness (log2 ratio) -2 -1 0 1 2at 5755.231 kb on + strand, within BWI76_RS27730at 5755.239 kb on - strand, within BWI76_RS27730at 5755.290 kb on - strand, within BWI76_RS27730at 5755.295 kb on - strand, within BWI76_RS27730at 5755.315 kb on + strand, within BWI76_RS27730at 5755.434 kb on - strand, within BWI76_RS27730at 5755.539 kb on + strand, within BWI76_RS27730at 5755.568 kb on - strand, within BWI76_RS27730at 5755.671 kb on + strand, within BWI76_RS27730at 5755.676 kb on + strand, within BWI76_RS27730at 5755.684 kb on - strand, within BWI76_RS27730at 5755.701 kb on + strand, within BWI76_RS27730at 5755.741 kb on - strand, within BWI76_RS27730at 5755.771 kb on + strand, within BWI76_RS27730at 5755.789 kb on - strand, within BWI76_RS27730at 5755.807 kb on - strand, within BWI76_RS27730at 5755.809 kb on + strand, within BWI76_RS27730at 5755.875 kb on + strandat 5755.993 kb on + strandat 5756.050 kb on + strandat 5756.180 kb on + strand, within BWI76_RS27735at 5756.190 kb on + strand, within BWI76_RS27735at 5756.207 kb on - strand, within BWI76_RS27735at 5756.345 kb on - strand, within BWI76_RS27735at 5756.420 kb on - strandat 5756.504 kb on + strandat 5756.597 kb on + strand, within BWI76_RS27740at 5756.597 kb on + strand, within BWI76_RS27740at 5756.597 kb on + strand, within BWI76_RS27740at 5756.605 kb on - strand, within BWI76_RS27740at 5756.605 kb on - strand, within BWI76_RS27740at 5756.702 kb on + strand, within BWI76_RS27740at 5756.728 kb on + strand, within BWI76_RS27740at 5756.873 kb on - strand, within BWI76_RS27740at 5756.897 kb on + strand, within BWI76_RS27740at 5756.897 kb on + strand, within BWI76_RS27740at 5756.952 kb on - strand, within BWI76_RS27740at 5756.960 kb on + strand, within BWI76_RS27740at 5756.993 kb on + strand, within BWI76_RS27740at 5756.993 kb on + strand, within BWI76_RS27740at 5757.001 kb on - strand, within BWI76_RS27740at 5757.066 kb on + strand, within BWI76_RS27740at 5757.092 kb on - strand, within BWI76_RS27740at 5757.105 kb on - strand, within BWI76_RS27740at 5757.187 kb on + strand, within BWI76_RS27740at 5757.338 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
5,755,231 + BWI76_RS27730 0.26 -0.7
5,755,239 - BWI76_RS27730 0.27 -0.2
5,755,290 - BWI76_RS27730 0.32 -0.2
5,755,295 - BWI76_RS27730 0.33 +0.3
5,755,315 + BWI76_RS27730 0.35 -0.3
5,755,434 - BWI76_RS27730 0.48 -0.8
5,755,539 + BWI76_RS27730 0.59 -0.1
5,755,568 - BWI76_RS27730 0.62 +0.6
5,755,671 + BWI76_RS27730 0.72 +1.2
5,755,676 + BWI76_RS27730 0.73 +0.4
5,755,684 - BWI76_RS27730 0.74 +0.1
5,755,701 + BWI76_RS27730 0.76 +0.4
5,755,741 - BWI76_RS27730 0.80 -0.2
5,755,771 + BWI76_RS27730 0.83 +0.2
5,755,789 - BWI76_RS27730 0.85 -0.3
5,755,807 - BWI76_RS27730 0.87 -0.4
5,755,809 + BWI76_RS27730 0.87 -1.4
5,755,875 + -0.3
5,755,993 + +1.9
5,756,050 + +0.1
5,756,180 + BWI76_RS27735 0.13 -0.2
5,756,190 + BWI76_RS27735 0.16 -0.6
5,756,207 - BWI76_RS27735 0.22 +0.3
5,756,345 - BWI76_RS27735 0.69 +1.7
5,756,420 - +0.5
5,756,504 + -1.8
5,756,597 + BWI76_RS27740 0.15 -0.4
5,756,597 + BWI76_RS27740 0.15 -0.3
5,756,597 + BWI76_RS27740 0.15 -0.2
5,756,605 - BWI76_RS27740 0.16 +0.5
5,756,605 - BWI76_RS27740 0.16 +0.4
5,756,702 + BWI76_RS27740 0.26 -0.6
5,756,728 + BWI76_RS27740 0.29 -0.2
5,756,873 - BWI76_RS27740 0.44 -0.1
5,756,897 + BWI76_RS27740 0.47 -0.0
5,756,897 + BWI76_RS27740 0.47 -0.4
5,756,952 - BWI76_RS27740 0.53 -0.1
5,756,960 + BWI76_RS27740 0.53 +0.8
5,756,993 + BWI76_RS27740 0.57 -0.0
5,756,993 + BWI76_RS27740 0.57 -0.7
5,757,001 - BWI76_RS27740 0.58 -0.1
5,757,066 + BWI76_RS27740 0.65 +0.4
5,757,092 - BWI76_RS27740 0.67 -0.3
5,757,105 - BWI76_RS27740 0.69 -0.1
5,757,187 + BWI76_RS27740 0.77 -0.2
5,757,338 - -0.3

Or see this region's nucleotide sequence