Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27660 and BWI76_RS27665 overlap by 1 nucleotides BWI76_RS27665 and BWI76_RS27670 are separated by 102 nucleotides BWI76_RS27670 and BWI76_RS27675 overlap by 4 nucleotides
BWI76_RS27660: BWI76_RS27660 - hypothetical protein, at 5,738,876 to 5,739,346
_RS27660
BWI76_RS27665: BWI76_RS27665 - phosphatase, at 5,739,346 to 5,739,972
_RS27665
BWI76_RS27670: BWI76_RS27670 - LysR family transcriptional regulator, at 5,740,075 to 5,740,989
_RS27670
BWI76_RS27675: BWI76_RS27675 - EmrB/QacA family drug resistance transporter, at 5,740,986 to 5,742,482
_RS27675
Position (kb) 5740
5741 Strain fitness (log2 ratio) -1
0
1
2 at 5739.125 kb on - strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.261 kb on - strand, within BWI76_RS27660 at 5739.319 kb on - strand at 5739.425 kb on + strand, within BWI76_RS27665 at 5739.428 kb on - strand, within BWI76_RS27665 at 5739.442 kb on + strand, within BWI76_RS27665 at 5739.452 kb on + strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand at 5739.484 kb on - strand, within BWI76_RS27665 at 5739.494 kb on - strand, within BWI76_RS27665 at 5739.541 kb on - strand, within BWI76_RS27665 at 5739.586 kb on + strand, within BWI76_RS27665 at 5739.591 kb on + strand, within BWI76_RS27665 at 5739.683 kb on + strand, within BWI76_RS27665 at 5739.723 kb on + strand, within BWI76_RS27665 at 5739.810 kb on + strand, within BWI76_RS27665 at 5739.968 kb on + strand at 5740.167 kb on - strand, within BWI76_RS27670 at 5740.297 kb on + strand, within BWI76_RS27670 at 5740.356 kb on + strand, within BWI76_RS27670 at 5740.453 kb on - strand, within BWI76_RS27670 at 5740.884 kb on + strand, within BWI76_RS27670 at 5740.884 kb on + strand, within BWI76_RS27670 at 5740.910 kb on + strand at 5740.918 kb on - strand at 5740.968 kb on + strand at 5740.999 kb on + strand at 5741.031 kb on - strand at 5741.141 kb on - strand, within BWI76_RS27675 at 5741.217 kb on + strand, within BWI76_RS27675 at 5741.287 kb on - strand, within BWI76_RS27675 at 5741.296 kb on + strand, within BWI76_RS27675 at 5741.304 kb on - strand, within BWI76_RS27675 at 5741.417 kb on - strand, within BWI76_RS27675 at 5741.556 kb on + strand, within BWI76_RS27675 at 5741.561 kb on + strand, within BWI76_RS27675 at 5741.584 kb on + strand, within BWI76_RS27675 at 5741.594 kb on + strand, within BWI76_RS27675 at 5741.841 kb on + strand, within BWI76_RS27675
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 5,739,125 - BWI76_RS27660 0.53 -0.2 5,739,228 + BWI76_RS27660 0.75 -0.5 5,739,228 + BWI76_RS27660 0.75 +0.9 5,739,228 + BWI76_RS27660 0.75 +0.2 5,739,228 + BWI76_RS27660 0.75 -0.4 5,739,236 - BWI76_RS27660 0.76 +0.4 5,739,236 - BWI76_RS27660 0.76 +0.1 5,739,236 - BWI76_RS27660 0.76 +0.1 5,739,236 - BWI76_RS27660 0.76 +0.2 5,739,261 - BWI76_RS27660 0.82 -0.4 5,739,319 - -0.3 5,739,425 + BWI76_RS27665 0.13 -0.2 5,739,428 - BWI76_RS27665 0.13 +0.1 5,739,442 + BWI76_RS27665 0.15 +0.4 5,739,452 + BWI76_RS27665 0.17 -0.8 5,739,460 - BWI76_RS27665 0.18 +0.4 5,739,460 - BWI76_RS27665 0.18 -0.4 5,739,460 - -1.0 5,739,484 - BWI76_RS27665 0.22 +0.7 5,739,494 - BWI76_RS27665 0.24 +0.2 5,739,541 - BWI76_RS27665 0.31 -0.9 5,739,586 + BWI76_RS27665 0.38 -1.2 5,739,591 + BWI76_RS27665 0.39 -0.2 5,739,683 + BWI76_RS27665 0.54 -0.8 5,739,723 + BWI76_RS27665 0.60 -0.6 5,739,810 + BWI76_RS27665 0.74 -0.6 5,739,968 + -0.0 5,740,167 - BWI76_RS27670 0.10 +0.7 5,740,297 + BWI76_RS27670 0.24 +1.8 5,740,356 + BWI76_RS27670 0.31 -0.7 5,740,453 - BWI76_RS27670 0.41 -0.3 5,740,884 + BWI76_RS27670 0.88 +0.7 5,740,884 + BWI76_RS27670 0.88 -0.1 5,740,910 + -0.1 5,740,918 - -0.5 5,740,968 + +0.3 5,740,999 + +0.3 5,741,031 - -0.0 5,741,141 - BWI76_RS27675 0.10 +0.7 5,741,217 + BWI76_RS27675 0.15 -0.1 5,741,287 - BWI76_RS27675 0.20 -0.1 5,741,296 + BWI76_RS27675 0.21 -0.7 5,741,304 - BWI76_RS27675 0.21 +0.6 5,741,417 - BWI76_RS27675 0.29 -0.1 5,741,556 + BWI76_RS27675 0.38 -1.0 5,741,561 + BWI76_RS27675 0.38 -0.3 5,741,584 + BWI76_RS27675 0.40 +0.1 5,741,594 + BWI76_RS27675 0.41 -0.1 5,741,841 + BWI76_RS27675 0.57 +0.0
Or see this region's nucleotide sequence