Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26200

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26195 and BWI76_RS26200 are separated by 15 nucleotidesBWI76_RS26200 and BWI76_RS26205 overlap by 1 nucleotides BWI76_RS26195: BWI76_RS26195 - glycogen phosphorylase, at 5,416,992 to 5,419,439 _RS26195 BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888 _RS26200 BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183 _RS26205 Position (kb) 5419 5420 5421Strain fitness (log2 ratio) -2 -1 0 1at 5418.520 kb on + strand, within BWI76_RS26195at 5418.538 kb on - strand, within BWI76_RS26195at 5418.560 kb on - strand, within BWI76_RS26195at 5418.560 kb on - strand, within BWI76_RS26195at 5418.684 kb on + strand, within BWI76_RS26195at 5418.738 kb on + strand, within BWI76_RS26195at 5418.757 kb on - strand, within BWI76_RS26195at 5419.143 kb on + strand, within BWI76_RS26195at 5419.187 kb on + strand, within BWI76_RS26195at 5419.195 kb on - strandat 5419.272 kb on + strandat 5419.304 kb on + strandat 5419.378 kb on + strandat 5419.408 kb on - strandat 5420.112 kb on - strand, within BWI76_RS26200at 5420.273 kb on - strand, within BWI76_RS26200at 5420.275 kb on + strand, within BWI76_RS26200at 5420.280 kb on + strand, within BWI76_RS26200at 5420.283 kb on - strand, within BWI76_RS26200at 5420.578 kb on + strand, within BWI76_RS26200at 5420.670 kb on - strand, within BWI76_RS26200at 5420.724 kb on - strand, within BWI76_RS26200at 5420.852 kb on + strandat 5420.869 kb on - strandat 5420.896 kb on + strandat 5420.904 kb on - strandat 5421.000 kb on + strandat 5421.506 kb on - strand, within BWI76_RS26205at 5421.640 kb on + strand, within BWI76_RS26205at 5421.648 kb on - strand, within BWI76_RS26205

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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5,418,520 + BWI76_RS26195 0.62 +1.2
5,418,538 - BWI76_RS26195 0.63 -0.7
5,418,560 - BWI76_RS26195 0.64 -0.7
5,418,560 - BWI76_RS26195 0.64 -0.1
5,418,684 + BWI76_RS26195 0.69 +0.3
5,418,738 + BWI76_RS26195 0.71 -0.2
5,418,757 - BWI76_RS26195 0.72 -0.2
5,419,143 + BWI76_RS26195 0.88 -0.4
5,419,187 + BWI76_RS26195 0.90 -0.2
5,419,195 - -0.0
5,419,272 + +0.1
5,419,304 + -0.2
5,419,378 + +0.1
5,419,408 - +0.2
5,420,112 - BWI76_RS26200 0.46 -1.1
5,420,273 - BWI76_RS26200 0.57 -1.4
5,420,275 + BWI76_RS26200 0.57 -0.7
5,420,280 + BWI76_RS26200 0.58 -1.8
5,420,283 - BWI76_RS26200 0.58 -1.2
5,420,578 + BWI76_RS26200 0.78 -0.6
5,420,670 - BWI76_RS26200 0.85 -0.7
5,420,724 - BWI76_RS26200 0.88 -0.2
5,420,852 + -0.7
5,420,869 - -0.3
5,420,896 + +0.8
5,420,904 - -0.9
5,421,000 + -0.3
5,421,506 - BWI76_RS26205 0.48 -0.3
5,421,640 + BWI76_RS26205 0.58 -0.4
5,421,648 - BWI76_RS26205 0.59 -0.8

Or see this region's nucleotide sequence