Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24100 and BWI76_RS24105 are separated by 8 nucleotides BWI76_RS24105 and BWI76_RS24110 overlap by 4 nucleotides BWI76_RS24110 and BWI76_RS24115 are separated by 12 nucleotides BWI76_RS24115 and BWI76_RS24120 overlap by 8 nucleotides
BWI76_RS24100: BWI76_RS24100 - YggS family pyridoxal phosphate enzyme, at 5,027,486 to 5,028,199
_RS24100
BWI76_RS24105: BWI76_RS24105 - resistance protein, at 5,028,208 to 5,028,774
_RS24105
BWI76_RS24110: BWI76_RS24110 - YggU family protein, at 5,028,771 to 5,029,061
_RS24110
BWI76_RS24115: BWI76_RS24115 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 5,029,074 to 5,029,667
_RS24115
BWI76_RS24120: BWI76_RS24120 - YggW family oxidoreductase, at 5,029,660 to 5,030,796
_RS24120
Position (kb) 5029
5030 Strain fitness (log2 ratio) -2
-1
0
1 at 5028.132 kb on + strand at 5028.140 kb on - strand at 5028.140 kb on - strand at 5028.413 kb on + strand, within BWI76_RS24105 at 5028.413 kb on + strand, within BWI76_RS24105 at 5028.421 kb on - strand, within BWI76_RS24105 at 5028.421 kb on - strand, within BWI76_RS24105 at 5028.447 kb on + strand, within BWI76_RS24105 at 5028.447 kb on + strand, within BWI76_RS24105 at 5028.560 kb on + strand, within BWI76_RS24105 at 5028.723 kb on + strand at 5028.759 kb on + strand at 5028.824 kb on + strand, within BWI76_RS24110 at 5028.824 kb on + strand, within BWI76_RS24110 at 5029.038 kb on - strand at 5029.292 kb on - strand, within BWI76_RS24115 at 5029.422 kb on + strand, within BWI76_RS24115 at 5029.461 kb on + strand, within BWI76_RS24115 at 5029.584 kb on + strand, within BWI76_RS24115 at 5029.592 kb on - strand, within BWI76_RS24115 at 5029.592 kb on - strand, within BWI76_RS24115 at 5029.592 kb on - strand, within BWI76_RS24115 at 5029.819 kb on - strand, within BWI76_RS24120 at 5030.128 kb on - strand, within BWI76_RS24120 at 5030.128 kb on - strand, within BWI76_RS24120 at 5030.242 kb on + strand, within BWI76_RS24120 at 5030.282 kb on + strand, within BWI76_RS24120 at 5030.330 kb on + strand at 5030.338 kb on - strand, within BWI76_RS24120 at 5030.486 kb on + strand, within BWI76_RS24120 at 5030.518 kb on - strand at 5030.621 kb on - strand, within BWI76_RS24120 at 5030.654 kb on + strand, within BWI76_RS24120 at 5030.662 kb on - strand, within BWI76_RS24120
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 5,028,132 + -0.4 5,028,140 - -0.9 5,028,140 - -0.1 5,028,413 + BWI76_RS24105 0.36 +0.2 5,028,413 + BWI76_RS24105 0.36 +0.4 5,028,421 - BWI76_RS24105 0.38 -0.3 5,028,421 - BWI76_RS24105 0.38 -0.1 5,028,447 + BWI76_RS24105 0.42 -0.0 5,028,447 + BWI76_RS24105 0.42 -0.4 5,028,560 + BWI76_RS24105 0.62 +0.2 5,028,723 + +0.1 5,028,759 + -1.3 5,028,824 + BWI76_RS24110 0.18 +0.7 5,028,824 + BWI76_RS24110 0.18 +0.2 5,029,038 - +0.6 5,029,292 - BWI76_RS24115 0.37 -1.4 5,029,422 + BWI76_RS24115 0.59 -1.0 5,029,461 + BWI76_RS24115 0.65 -0.1 5,029,584 + BWI76_RS24115 0.86 -0.7 5,029,592 - BWI76_RS24115 0.87 -0.8 5,029,592 - BWI76_RS24115 0.87 -1.1 5,029,592 - BWI76_RS24115 0.87 -1.1 5,029,819 - BWI76_RS24120 0.14 -0.4 5,030,128 - BWI76_RS24120 0.41 -0.6 5,030,128 - BWI76_RS24120 0.41 -1.1 5,030,242 + BWI76_RS24120 0.51 -0.6 5,030,282 + BWI76_RS24120 0.55 -1.1 5,030,330 + -0.8 5,030,338 - BWI76_RS24120 0.60 -2.3 5,030,486 + BWI76_RS24120 0.73 -1.0 5,030,518 - +0.1 5,030,621 - BWI76_RS24120 0.85 +0.3 5,030,654 + BWI76_RS24120 0.87 +0.4 5,030,662 - BWI76_RS24120 0.88 -1.7
Or see this region's nucleotide sequence