Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23530

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23525 and BWI76_RS23530 are separated by 80 nucleotidesBWI76_RS23530 and BWI76_RS23535 are separated by 83 nucleotidesBWI76_RS23535 and BWI76_RS23540 are separated by 149 nucleotides BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429 _RS23525 BWI76_RS23530: BWI76_RS23530 - MarR family transcriptional regulator, at 4,908,510 to 4,909,016 _RS23530 BWI76_RS23535: BWI76_RS23535 - hypothetical protein, at 4,909,100 to 4,909,561 _RS23535 BWI76_RS23540: BWI76_RS23540 - putative lysine exporter protein, at 4,909,711 to 4,910,322 _RS23540 Position (kb) 4908 4909 4910Strain fitness (log2 ratio) -1 0 1at 4907.526 kb on + strandat 4907.534 kb on - strandat 4907.597 kb on + strandat 4907.753 kb on + strand, within BWI76_RS23525at 4907.792 kb on - strand, within BWI76_RS23525at 4907.792 kb on - strand, within BWI76_RS23525at 4907.796 kb on - strand, within BWI76_RS23525at 4907.819 kb on - strand, within BWI76_RS23525at 4907.999 kb on - strand, within BWI76_RS23525at 4908.128 kb on + strand, within BWI76_RS23525at 4908.193 kb on - strand, within BWI76_RS23525at 4908.522 kb on + strandat 4908.525 kb on - strandat 4908.527 kb on + strandat 4908.630 kb on - strand, within BWI76_RS23530at 4908.742 kb on - strand, within BWI76_RS23530at 4908.880 kb on + strand, within BWI76_RS23530at 4908.987 kb on + strandat 4909.019 kb on - strandat 4909.091 kb on + strandat 4909.099 kb on - strandat 4909.161 kb on - strand, within BWI76_RS23535at 4909.193 kb on - strand, within BWI76_RS23535at 4909.247 kb on - strand, within BWI76_RS23535at 4909.692 kb on + strandat 4909.705 kb on - strandat 4909.705 kb on - strandat 4909.705 kb on - strandat 4909.783 kb on + strand, within BWI76_RS23540at 4910.010 kb on - strand, within BWI76_RS23540

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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4,907,526 + -1.1
4,907,534 - -1.6
4,907,597 + -0.9
4,907,753 + BWI76_RS23525 0.24 -0.1
4,907,792 - BWI76_RS23525 0.28 -0.2
4,907,792 - BWI76_RS23525 0.28 +0.2
4,907,796 - BWI76_RS23525 0.29 +0.1
4,907,819 - BWI76_RS23525 0.31 -0.1
4,907,999 - BWI76_RS23525 0.52 -0.9
4,908,128 + BWI76_RS23525 0.66 +0.2
4,908,193 - BWI76_RS23525 0.73 +0.7
4,908,522 + +0.5
4,908,525 - +0.5
4,908,527 + -0.8
4,908,630 - BWI76_RS23530 0.24 +0.1
4,908,742 - BWI76_RS23530 0.46 +0.3
4,908,880 + BWI76_RS23530 0.73 +0.3
4,908,987 + -0.2
4,909,019 - -0.4
4,909,091 + +0.4
4,909,099 - -0.2
4,909,161 - BWI76_RS23535 0.13 -0.1
4,909,193 - BWI76_RS23535 0.20 +0.1
4,909,247 - BWI76_RS23535 0.32 +0.6
4,909,692 + -0.4
4,909,705 - -0.8
4,909,705 - -0.1
4,909,705 - -0.0
4,909,783 + BWI76_RS23540 0.12 -0.5
4,910,010 - BWI76_RS23540 0.49 +0.3

Or see this region's nucleotide sequence