Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23485

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23475 and BWI76_RS23480 are separated by 137 nucleotidesBWI76_RS23480 and BWI76_RS23485 are separated by 57 nucleotidesBWI76_RS23485 and BWI76_RS23490 are separated by 14 nucleotides BWI76_RS23475: BWI76_RS23475 - helix-turn-helix transcriptional regulator, at 4,898,002 to 4,898,586 _RS23475 BWI76_RS23480: BWI76_RS23480 - EAL domain-containing protein, at 4,898,724 to 4,899,440 _RS23480 BWI76_RS23485: BWI76_RS23485 - hypothetical protein, at 4,899,498 to 4,900,148 _RS23485 BWI76_RS23490: BWI76_RS23490 - fimbrial protein, at 4,900,163 to 4,901,158 _RS23490 Position (kb) 4899 4900 4901Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4898.501 kb on + strand, within BWI76_RS23475at 4898.501 kb on + strand, within BWI76_RS23475at 4898.501 kb on + strand, within BWI76_RS23475at 4898.501 kb on + strand, within BWI76_RS23475at 4898.501 kb on + strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.502 kb on - strand, within BWI76_RS23475at 4898.509 kb on - strand, within BWI76_RS23475at 4898.509 kb on - strand, within BWI76_RS23475at 4898.509 kb on - strand, within BWI76_RS23475at 4898.509 kb on - strand, within BWI76_RS23475at 4898.580 kb on - strandat 4898.661 kb on + strandat 4898.681 kb on - strandat 4898.689 kb on + strandat 4898.689 kb on + strandat 4898.697 kb on - strandat 4898.697 kb on - strandat 4898.699 kb on - strandat 4898.765 kb on + strandat 4898.816 kb on - strand, within BWI76_RS23480at 4898.818 kb on - strand, within BWI76_RS23480at 4898.823 kb on + strand, within BWI76_RS23480at 4898.829 kb on - strand, within BWI76_RS23480at 4898.831 kb on - strand, within BWI76_RS23480at 4898.832 kb on - strandat 4898.833 kb on + strand, within BWI76_RS23480at 4898.833 kb on + strand, within BWI76_RS23480at 4898.841 kb on - strand, within BWI76_RS23480at 4898.850 kb on - strand, within BWI76_RS23480at 4898.850 kb on - strand, within BWI76_RS23480at 4898.860 kb on - strand, within BWI76_RS23480at 4898.863 kb on - strandat 4898.932 kb on - strand, within BWI76_RS23480at 4898.988 kb on - strand, within BWI76_RS23480at 4898.995 kb on + strand, within BWI76_RS23480at 4898.995 kb on + strand, within BWI76_RS23480at 4899.003 kb on - strand, within BWI76_RS23480at 4899.003 kb on - strand, within BWI76_RS23480at 4899.003 kb on - strand, within BWI76_RS23480at 4899.009 kb on + strand, within BWI76_RS23480at 4899.010 kb on - strand, within BWI76_RS23480at 4899.033 kb on - strand, within BWI76_RS23480at 4899.034 kb on - strand, within BWI76_RS23480at 4899.034 kb on - strand, within BWI76_RS23480at 4899.047 kb on + strand, within BWI76_RS23480at 4899.069 kb on - strand, within BWI76_RS23480at 4899.111 kb on + strand, within BWI76_RS23480at 4899.111 kb on + strand, within BWI76_RS23480at 4899.123 kb on + strand, within BWI76_RS23480at 4899.125 kb on + strand, within BWI76_RS23480at 4899.130 kb on + strand, within BWI76_RS23480at 4899.130 kb on + strand, within BWI76_RS23480at 4899.130 kb on + strand, within BWI76_RS23480at 4899.130 kb on + strand, within BWI76_RS23480at 4899.131 kb on - strand, within BWI76_RS23480at 4899.137 kb on + strand, within BWI76_RS23480at 4899.138 kb on - strand, within BWI76_RS23480at 4899.142 kb on + strand, within BWI76_RS23480at 4899.145 kb on - strand, within BWI76_RS23480at 4899.150 kb on - strand, within BWI76_RS23480at 4899.150 kb on - strand, within BWI76_RS23480at 4899.278 kb on + strand, within BWI76_RS23480at 4899.278 kb on + strand, within BWI76_RS23480at 4899.283 kb on + strand, within BWI76_RS23480at 4899.283 kb on + strand, within BWI76_RS23480at 4899.284 kb on - strand, within BWI76_RS23480at 4899.291 kb on - strand, within BWI76_RS23480at 4899.299 kb on + strand, within BWI76_RS23480at 4899.310 kb on - strand, within BWI76_RS23480at 4899.336 kb on + strand, within BWI76_RS23480at 4899.339 kb on + strand, within BWI76_RS23480at 4899.339 kb on + strand, within BWI76_RS23480at 4899.339 kb on + strand, within BWI76_RS23480at 4899.347 kb on - strand, within BWI76_RS23480at 4899.347 kb on - strand, within BWI76_RS23480at 4899.347 kb on - strand, within BWI76_RS23480at 4899.348 kb on + strand, within BWI76_RS23480at 4899.350 kb on + strand, within BWI76_RS23480at 4899.350 kb on + strand, within BWI76_RS23480at 4899.356 kb on - strand, within BWI76_RS23480at 4899.357 kb on - strand, within BWI76_RS23480at 4899.358 kb on - strand, within BWI76_RS23480at 4899.358 kb on - strand, within BWI76_RS23480at 4899.371 kb on - strandat 4899.375 kb on + strandat 4899.388 kb on + strandat 4899.394 kb on - strandat 4899.394 kb on - strandat 4899.398 kb on + strandat 4899.399 kb on - strandat 4899.403 kb on + strandat 4899.403 kb on + strandat 4899.403 kb on + strandat 4899.406 kb on + strandat 4899.408 kb on + strandat 4899.411 kb on - strandat 4899.411 kb on - strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.416 kb on + strandat 4899.424 kb on - strandat 4899.424 kb on - strandat 4899.424 kb on - strandat 4899.474 kb on + strandat 4899.486 kb on + strandat 4899.494 kb on - strandat 4899.494 kb on - strandat 4899.494 kb on - strandat 4899.496 kb on - strandat 4899.502 kb on - strandat 4899.512 kb on + strandat 4899.520 kb on - strandat 4899.531 kb on + strandat 4899.531 kb on + strandat 4899.531 kb on + strandat 4899.531 kb on + strandat 4899.531 kb on + strandat 4899.531 kb on + strandat 4899.536 kb on + strandat 4899.539 kb on - strandat 4899.539 kb on - strandat 4899.539 kb on - strandat 4899.539 kb on - strandat 4899.539 kb on - strandat 4899.539 kb on - strandat 4899.539 kb on - strandat 4899.565 kb on + strand, within BWI76_RS23485at 4899.565 kb on + strand, within BWI76_RS23485at 4899.565 kb on + strand, within BWI76_RS23485at 4899.565 kb on + strand, within BWI76_RS23485at 4899.566 kb on + strand, within BWI76_RS23485at 4899.566 kb on + strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.573 kb on - strand, within BWI76_RS23485at 4899.608 kb on - strand, within BWI76_RS23485at 4899.613 kb on + strand, within BWI76_RS23485at 4899.638 kb on + strand, within BWI76_RS23485at 4899.641 kb on - strand, within BWI76_RS23485at 4899.675 kb on - strand, within BWI76_RS23485at 4899.747 kb on - strand, within BWI76_RS23485at 4899.766 kb on - strand, within BWI76_RS23485at 4899.796 kb on - strand, within BWI76_RS23485at 4899.806 kb on - strand, within BWI76_RS23485at 4900.024 kb on + strand, within BWI76_RS23485at 4900.092 kb on + strandat 4900.095 kb on - strandat 4900.095 kb on - strandat 4900.095 kb on - strandat 4900.133 kb on + strandat 4900.185 kb on - strandat 4900.194 kb on + strandat 4900.217 kb on - strandat 4900.255 kb on + strandat 4900.278 kb on - strand, within BWI76_RS23490at 4900.339 kb on + strand, within BWI76_RS23490at 4900.405 kb on + strand, within BWI76_RS23490at 4900.405 kb on + strand, within BWI76_RS23490at 4900.405 kb on + strand, within BWI76_RS23490at 4900.405 kb on + strand, within BWI76_RS23490at 4900.405 kb on + strand, within BWI76_RS23490at 4900.413 kb on - strand, within BWI76_RS23490at 4900.413 kb on - strand, within BWI76_RS23490at 4900.413 kb on - strand, within BWI76_RS23490at 4900.413 kb on - strand, within BWI76_RS23490at 4900.413 kb on - strand, within BWI76_RS23490at 4900.465 kb on + strand, within BWI76_RS23490at 4900.484 kb on - strand, within BWI76_RS23490at 4900.588 kb on + strand, within BWI76_RS23490at 4900.894 kb on - strand, within BWI76_RS23490at 4901.047 kb on - strand, within BWI76_RS23490at 4901.056 kb on + strand, within BWI76_RS23490at 4901.085 kb on + strandat 4901.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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4,898,501 + BWI76_RS23475 0.85 -0.5
4,898,501 + BWI76_RS23475 0.85 -0.7
4,898,501 + BWI76_RS23475 0.85 -5.1
4,898,501 + BWI76_RS23475 0.85 -0.1
4,898,501 + BWI76_RS23475 0.85 -0.1
4,898,502 - BWI76_RS23475 0.85 +0.8
4,898,502 - BWI76_RS23475 0.85 -0.1
4,898,502 - BWI76_RS23475 0.85 -0.1
4,898,502 - BWI76_RS23475 0.85 +0.8
4,898,502 - BWI76_RS23475 0.85 -1.4
4,898,502 - BWI76_RS23475 0.85 -0.5
4,898,502 - BWI76_RS23475 0.85 -0.1
4,898,502 - BWI76_RS23475 0.85 -0.7
4,898,502 - BWI76_RS23475 0.85 +0.4
4,898,509 - BWI76_RS23475 0.87 -1.0
4,898,509 - BWI76_RS23475 0.87 -0.7
4,898,509 - BWI76_RS23475 0.87 -0.3
4,898,509 - BWI76_RS23475 0.87 +0.3
4,898,580 - -0.7
4,898,661 + -1.1
4,898,681 - -0.5
4,898,689 + -0.9
4,898,689 + -1.2
4,898,697 - -1.3
4,898,697 - -1.5
4,898,699 - -0.6
4,898,765 + -2.2
4,898,816 - BWI76_RS23480 0.13 -2.6
4,898,818 - BWI76_RS23480 0.13 -2.5
4,898,823 + BWI76_RS23480 0.14 -0.6
4,898,829 - BWI76_RS23480 0.15 +0.3
4,898,831 - BWI76_RS23480 0.15 -3.1
4,898,832 - +0.7
4,898,833 + BWI76_RS23480 0.15 -1.4
4,898,833 + BWI76_RS23480 0.15 -2.7
4,898,841 - BWI76_RS23480 0.16 -0.0
4,898,850 - BWI76_RS23480 0.18 -2.1
4,898,850 - BWI76_RS23480 0.18 -2.9
4,898,860 - BWI76_RS23480 0.19 -3.4
4,898,863 - -1.7
4,898,932 - BWI76_RS23480 0.29 -1.1
4,898,988 - BWI76_RS23480 0.37 -1.5
4,898,995 + BWI76_RS23480 0.38 -2.4
4,898,995 + BWI76_RS23480 0.38 -1.1
4,899,003 - BWI76_RS23480 0.39 -1.4
4,899,003 - BWI76_RS23480 0.39 -1.4
4,899,003 - BWI76_RS23480 0.39 -2.0
4,899,009 + BWI76_RS23480 0.40 -1.8
4,899,010 - BWI76_RS23480 0.40 +0.3
4,899,033 - BWI76_RS23480 0.43 -2.4
4,899,034 - BWI76_RS23480 0.43 -2.6
4,899,034 - BWI76_RS23480 0.43 -1.7
4,899,047 + BWI76_RS23480 0.45 -1.4
4,899,069 - BWI76_RS23480 0.48 -0.4
4,899,111 + BWI76_RS23480 0.54 -1.3
4,899,111 + BWI76_RS23480 0.54 -3.4
4,899,123 + BWI76_RS23480 0.56 -2.4
4,899,125 + BWI76_RS23480 0.56 -1.4
4,899,130 + BWI76_RS23480 0.57 -1.4
4,899,130 + BWI76_RS23480 0.57 -2.9
4,899,130 + BWI76_RS23480 0.57 -1.0
4,899,130 + BWI76_RS23480 0.57 -2.2
4,899,131 - BWI76_RS23480 0.57 -1.4
4,899,137 + BWI76_RS23480 0.58 -2.0
4,899,138 - BWI76_RS23480 0.58 -0.6
4,899,142 + BWI76_RS23480 0.58 -1.4
4,899,145 - BWI76_RS23480 0.59 -2.5
4,899,150 - BWI76_RS23480 0.59 +0.7
4,899,150 - BWI76_RS23480 0.59 -0.4
4,899,278 + BWI76_RS23480 0.77 -1.4
4,899,278 + BWI76_RS23480 0.77 -2.0
4,899,283 + BWI76_RS23480 0.78 -2.2
4,899,283 + BWI76_RS23480 0.78 -1.3
4,899,284 - BWI76_RS23480 0.78 -2.4
4,899,291 - BWI76_RS23480 0.79 -2.0
4,899,299 + BWI76_RS23480 0.80 -1.6
4,899,310 - BWI76_RS23480 0.82 -1.7
4,899,336 + BWI76_RS23480 0.85 -2.5
4,899,339 + BWI76_RS23480 0.86 -1.6
4,899,339 + BWI76_RS23480 0.86 -0.7
4,899,339 + BWI76_RS23480 0.86 -3.2
4,899,347 - BWI76_RS23480 0.87 -2.1
4,899,347 - BWI76_RS23480 0.87 -1.8
4,899,347 - BWI76_RS23480 0.87 -1.7
4,899,348 + BWI76_RS23480 0.87 -2.6
4,899,350 + BWI76_RS23480 0.87 -2.7
4,899,350 + BWI76_RS23480 0.87 -1.7
4,899,356 - BWI76_RS23480 0.88 -1.5
4,899,357 - BWI76_RS23480 0.88 -0.1
4,899,358 - BWI76_RS23480 0.88 -1.2
4,899,358 - BWI76_RS23480 0.88 -3.1
4,899,371 - -2.5
4,899,375 + -1.4
4,899,388 + -1.0
4,899,394 - -1.3
4,899,394 - -1.0
4,899,398 + -1.3
4,899,399 - -2.4
4,899,403 + -2.3
4,899,403 + -1.7
4,899,403 + -2.8
4,899,406 + +0.1
4,899,408 + -2.9
4,899,411 - -2.4
4,899,411 - -1.1
4,899,416 + -3.7
4,899,416 + -2.2
4,899,416 + -1.9
4,899,416 + -1.2
4,899,416 + -0.3
4,899,416 + -1.6
4,899,416 + -1.8
4,899,416 + -0.6
4,899,424 - -1.8
4,899,424 - -2.2
4,899,424 - +0.1
4,899,474 + -0.7
4,899,486 + -0.9
4,899,494 - -1.9
4,899,494 - -0.5
4,899,494 - -0.9
4,899,496 - -1.6
4,899,502 - -1.0
4,899,512 + +0.4
4,899,520 - -2.0
4,899,531 + -1.0
4,899,531 + -1.3
4,899,531 + -0.4
4,899,531 + +0.3
4,899,531 + -1.6
4,899,531 + -1.6
4,899,536 + -0.1
4,899,539 - -0.8
4,899,539 - -1.3
4,899,539 - -1.2
4,899,539 - -0.9
4,899,539 - -2.0
4,899,539 - -0.8
4,899,539 - -0.9
4,899,565 + BWI76_RS23485 0.10 -0.5
4,899,565 + BWI76_RS23485 0.10 -0.6
4,899,565 + BWI76_RS23485 0.10 -2.0
4,899,565 + BWI76_RS23485 0.10 -0.0
4,899,566 + BWI76_RS23485 0.10 -0.6
4,899,566 + BWI76_RS23485 0.10 -1.4
4,899,573 - BWI76_RS23485 0.12 -1.9
4,899,573 - BWI76_RS23485 0.12 -2.1
4,899,573 - BWI76_RS23485 0.12 -1.2
4,899,573 - BWI76_RS23485 0.12 -1.9
4,899,573 - BWI76_RS23485 0.12 -1.3
4,899,573 - BWI76_RS23485 0.12 -0.2
4,899,573 - BWI76_RS23485 0.12 -0.2
4,899,573 - BWI76_RS23485 0.12 -0.6
4,899,608 - BWI76_RS23485 0.17 -1.6
4,899,613 + BWI76_RS23485 0.18 -2.0
4,899,638 + BWI76_RS23485 0.22 -0.3
4,899,641 - BWI76_RS23485 0.22 -0.6
4,899,675 - BWI76_RS23485 0.27 -1.5
4,899,747 - BWI76_RS23485 0.38 -0.1
4,899,766 - BWI76_RS23485 0.41 -0.6
4,899,796 - BWI76_RS23485 0.46 -0.4
4,899,806 - BWI76_RS23485 0.47 -1.7
4,900,024 + BWI76_RS23485 0.81 +0.1
4,900,092 + -0.1
4,900,095 - -0.9
4,900,095 - -0.8
4,900,095 - -1.9
4,900,133 + -0.8
4,900,185 - -1.9
4,900,194 + -1.0
4,900,217 - -0.1
4,900,255 + -0.3
4,900,278 - BWI76_RS23490 0.12 -1.0
4,900,339 + BWI76_RS23490 0.18 -0.1
4,900,405 + BWI76_RS23490 0.24 +0.0
4,900,405 + BWI76_RS23490 0.24 -0.8
4,900,405 + BWI76_RS23490 0.24 +0.1
4,900,405 + BWI76_RS23490 0.24 -0.0
4,900,405 + BWI76_RS23490 0.24 +0.0
4,900,413 - BWI76_RS23490 0.25 -0.8
4,900,413 - BWI76_RS23490 0.25 -0.9
4,900,413 - BWI76_RS23490 0.25 -0.2
4,900,413 - BWI76_RS23490 0.25 -0.1
4,900,413 - BWI76_RS23490 0.25 +2.4
4,900,465 + BWI76_RS23490 0.30 -0.3
4,900,484 - BWI76_RS23490 0.32 -0.7
4,900,588 + BWI76_RS23490 0.43 -0.2
4,900,894 - BWI76_RS23490 0.73 +0.1
4,901,047 - BWI76_RS23490 0.89 -0.7
4,901,056 + BWI76_RS23490 0.90 +0.0
4,901,085 + +0.4
4,901,124 - -0.3

Or see this region's nucleotide sequence