Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23475 and BWI76_RS23480 are separated by 137 nucleotides BWI76_RS23480 and BWI76_RS23485 are separated by 57 nucleotides BWI76_RS23485 and BWI76_RS23490 are separated by 14 nucleotides
BWI76_RS23475: BWI76_RS23475 - helix-turn-helix transcriptional regulator, at 4,898,002 to 4,898,586
_RS23475
BWI76_RS23480: BWI76_RS23480 - EAL domain-containing protein, at 4,898,724 to 4,899,440
_RS23480
BWI76_RS23485: BWI76_RS23485 - hypothetical protein, at 4,899,498 to 4,900,148
_RS23485
BWI76_RS23490: BWI76_RS23490 - fimbrial protein, at 4,900,163 to 4,901,158
_RS23490
Position (kb)
4899
4900
4901 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4898.501 kb on + strand, within BWI76_RS23475 at 4898.501 kb on + strand, within BWI76_RS23475 at 4898.501 kb on + strand, within BWI76_RS23475 at 4898.501 kb on + strand, within BWI76_RS23475 at 4898.501 kb on + strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.502 kb on - strand, within BWI76_RS23475 at 4898.509 kb on - strand, within BWI76_RS23475 at 4898.509 kb on - strand, within BWI76_RS23475 at 4898.509 kb on - strand, within BWI76_RS23475 at 4898.509 kb on - strand, within BWI76_RS23475 at 4898.580 kb on - strand at 4898.661 kb on + strand at 4898.681 kb on - strand at 4898.689 kb on + strand at 4898.689 kb on + strand at 4898.697 kb on - strand at 4898.697 kb on - strand at 4898.699 kb on - strand at 4898.765 kb on + strand at 4898.816 kb on - strand, within BWI76_RS23480 at 4898.818 kb on - strand, within BWI76_RS23480 at 4898.823 kb on + strand, within BWI76_RS23480 at 4898.829 kb on - strand, within BWI76_RS23480 at 4898.831 kb on - strand, within BWI76_RS23480 at 4898.832 kb on - strand at 4898.833 kb on + strand, within BWI76_RS23480 at 4898.833 kb on + strand, within BWI76_RS23480 at 4898.841 kb on - strand, within BWI76_RS23480 at 4898.850 kb on - strand, within BWI76_RS23480 at 4898.850 kb on - strand, within BWI76_RS23480 at 4898.860 kb on - strand, within BWI76_RS23480 at 4898.863 kb on - strand at 4898.932 kb on - strand, within BWI76_RS23480 at 4898.988 kb on - strand, within BWI76_RS23480 at 4898.995 kb on + strand, within BWI76_RS23480 at 4898.995 kb on + strand, within BWI76_RS23480 at 4899.003 kb on - strand, within BWI76_RS23480 at 4899.003 kb on - strand, within BWI76_RS23480 at 4899.003 kb on - strand, within BWI76_RS23480 at 4899.009 kb on + strand, within BWI76_RS23480 at 4899.010 kb on - strand, within BWI76_RS23480 at 4899.033 kb on - strand, within BWI76_RS23480 at 4899.034 kb on - strand, within BWI76_RS23480 at 4899.034 kb on - strand, within BWI76_RS23480 at 4899.047 kb on + strand, within BWI76_RS23480 at 4899.069 kb on - strand, within BWI76_RS23480 at 4899.111 kb on + strand, within BWI76_RS23480 at 4899.111 kb on + strand, within BWI76_RS23480 at 4899.123 kb on + strand, within BWI76_RS23480 at 4899.125 kb on + strand, within BWI76_RS23480 at 4899.130 kb on + strand, within BWI76_RS23480 at 4899.130 kb on + strand, within BWI76_RS23480 at 4899.130 kb on + strand, within BWI76_RS23480 at 4899.130 kb on + strand, within BWI76_RS23480 at 4899.131 kb on - strand, within BWI76_RS23480 at 4899.137 kb on + strand, within BWI76_RS23480 at 4899.138 kb on - strand, within BWI76_RS23480 at 4899.142 kb on + strand, within BWI76_RS23480 at 4899.145 kb on - strand, within BWI76_RS23480 at 4899.150 kb on - strand, within BWI76_RS23480 at 4899.150 kb on - strand, within BWI76_RS23480 at 4899.278 kb on + strand, within BWI76_RS23480 at 4899.278 kb on + strand, within BWI76_RS23480 at 4899.283 kb on + strand, within BWI76_RS23480 at 4899.283 kb on + strand, within BWI76_RS23480 at 4899.284 kb on - strand, within BWI76_RS23480 at 4899.291 kb on - strand, within BWI76_RS23480 at 4899.299 kb on + strand, within BWI76_RS23480 at 4899.310 kb on - strand, within BWI76_RS23480 at 4899.336 kb on + strand, within BWI76_RS23480 at 4899.339 kb on + strand, within BWI76_RS23480 at 4899.339 kb on + strand, within BWI76_RS23480 at 4899.339 kb on + strand, within BWI76_RS23480 at 4899.347 kb on - strand, within BWI76_RS23480 at 4899.347 kb on - strand, within BWI76_RS23480 at 4899.347 kb on - strand, within BWI76_RS23480 at 4899.348 kb on + strand, within BWI76_RS23480 at 4899.350 kb on + strand, within BWI76_RS23480 at 4899.350 kb on + strand, within BWI76_RS23480 at 4899.356 kb on - strand, within BWI76_RS23480 at 4899.357 kb on - strand, within BWI76_RS23480 at 4899.358 kb on - strand, within BWI76_RS23480 at 4899.358 kb on - strand, within BWI76_RS23480 at 4899.371 kb on - strand at 4899.375 kb on + strand at 4899.388 kb on + strand at 4899.394 kb on - strand at 4899.394 kb on - strand at 4899.398 kb on + strand at 4899.399 kb on - strand at 4899.403 kb on + strand at 4899.403 kb on + strand at 4899.403 kb on + strand at 4899.406 kb on + strand at 4899.408 kb on + strand at 4899.411 kb on - strand at 4899.411 kb on - strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.416 kb on + strand at 4899.424 kb on - strand at 4899.424 kb on - strand at 4899.424 kb on - strand at 4899.474 kb on + strand at 4899.486 kb on + strand at 4899.494 kb on - strand at 4899.494 kb on - strand at 4899.494 kb on - strand at 4899.496 kb on - strand at 4899.502 kb on - strand at 4899.512 kb on + strand at 4899.520 kb on - strand at 4899.531 kb on + strand at 4899.531 kb on + strand at 4899.531 kb on + strand at 4899.531 kb on + strand at 4899.531 kb on + strand at 4899.531 kb on + strand at 4899.536 kb on + strand at 4899.539 kb on - strand at 4899.539 kb on - strand at 4899.539 kb on - strand at 4899.539 kb on - strand at 4899.539 kb on - strand at 4899.539 kb on - strand at 4899.539 kb on - strand at 4899.565 kb on + strand, within BWI76_RS23485 at 4899.565 kb on + strand, within BWI76_RS23485 at 4899.565 kb on + strand, within BWI76_RS23485 at 4899.565 kb on + strand, within BWI76_RS23485 at 4899.566 kb on + strand, within BWI76_RS23485 at 4899.566 kb on + strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.573 kb on - strand, within BWI76_RS23485 at 4899.608 kb on - strand, within BWI76_RS23485 at 4899.613 kb on + strand, within BWI76_RS23485 at 4899.638 kb on + strand, within BWI76_RS23485 at 4899.641 kb on - strand, within BWI76_RS23485 at 4899.675 kb on - strand, within BWI76_RS23485 at 4899.747 kb on - strand, within BWI76_RS23485 at 4899.766 kb on - strand, within BWI76_RS23485 at 4899.796 kb on - strand, within BWI76_RS23485 at 4899.806 kb on - strand, within BWI76_RS23485 at 4900.024 kb on + strand, within BWI76_RS23485 at 4900.092 kb on + strand at 4900.095 kb on - strand at 4900.095 kb on - strand at 4900.095 kb on - strand at 4900.133 kb on + strand at 4900.185 kb on - strand at 4900.194 kb on + strand at 4900.217 kb on - strand at 4900.255 kb on + strand at 4900.278 kb on - strand, within BWI76_RS23490 at 4900.339 kb on + strand, within BWI76_RS23490 at 4900.405 kb on + strand, within BWI76_RS23490 at 4900.405 kb on + strand, within BWI76_RS23490 at 4900.405 kb on + strand, within BWI76_RS23490 at 4900.405 kb on + strand, within BWI76_RS23490 at 4900.405 kb on + strand, within BWI76_RS23490 at 4900.413 kb on - strand, within BWI76_RS23490 at 4900.413 kb on - strand, within BWI76_RS23490 at 4900.413 kb on - strand, within BWI76_RS23490 at 4900.413 kb on - strand, within BWI76_RS23490 at 4900.413 kb on - strand, within BWI76_RS23490 at 4900.465 kb on + strand, within BWI76_RS23490 at 4900.484 kb on - strand, within BWI76_RS23490 at 4900.588 kb on + strand, within BWI76_RS23490 at 4900.894 kb on - strand, within BWI76_RS23490 at 4901.047 kb on - strand, within BWI76_RS23490 at 4901.056 kb on + strand, within BWI76_RS23490 at 4901.085 kb on + strand at 4901.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 4,898,501 + BWI76_RS23475 0.85 -0.5 4,898,501 + BWI76_RS23475 0.85 -0.7 4,898,501 + BWI76_RS23475 0.85 -5.1 4,898,501 + BWI76_RS23475 0.85 -0.1 4,898,501 + BWI76_RS23475 0.85 -0.1 4,898,502 - BWI76_RS23475 0.85 +0.8 4,898,502 - BWI76_RS23475 0.85 -0.1 4,898,502 - BWI76_RS23475 0.85 -0.1 4,898,502 - BWI76_RS23475 0.85 +0.8 4,898,502 - BWI76_RS23475 0.85 -1.4 4,898,502 - BWI76_RS23475 0.85 -0.5 4,898,502 - BWI76_RS23475 0.85 -0.1 4,898,502 - BWI76_RS23475 0.85 -0.7 4,898,502 - BWI76_RS23475 0.85 +0.4 4,898,509 - BWI76_RS23475 0.87 -1.0 4,898,509 - BWI76_RS23475 0.87 -0.7 4,898,509 - BWI76_RS23475 0.87 -0.3 4,898,509 - BWI76_RS23475 0.87 +0.3 4,898,580 - -0.7 4,898,661 + -1.1 4,898,681 - -0.5 4,898,689 + -0.9 4,898,689 + -1.2 4,898,697 - -1.3 4,898,697 - -1.5 4,898,699 - -0.6 4,898,765 + -2.2 4,898,816 - BWI76_RS23480 0.13 -2.6 4,898,818 - BWI76_RS23480 0.13 -2.5 4,898,823 + BWI76_RS23480 0.14 -0.6 4,898,829 - BWI76_RS23480 0.15 +0.3 4,898,831 - BWI76_RS23480 0.15 -3.1 4,898,832 - +0.7 4,898,833 + BWI76_RS23480 0.15 -1.4 4,898,833 + BWI76_RS23480 0.15 -2.7 4,898,841 - BWI76_RS23480 0.16 -0.0 4,898,850 - BWI76_RS23480 0.18 -2.1 4,898,850 - BWI76_RS23480 0.18 -2.9 4,898,860 - BWI76_RS23480 0.19 -3.4 4,898,863 - -1.7 4,898,932 - BWI76_RS23480 0.29 -1.1 4,898,988 - BWI76_RS23480 0.37 -1.5 4,898,995 + BWI76_RS23480 0.38 -2.4 4,898,995 + BWI76_RS23480 0.38 -1.1 4,899,003 - BWI76_RS23480 0.39 -1.4 4,899,003 - BWI76_RS23480 0.39 -1.4 4,899,003 - BWI76_RS23480 0.39 -2.0 4,899,009 + BWI76_RS23480 0.40 -1.8 4,899,010 - BWI76_RS23480 0.40 +0.3 4,899,033 - BWI76_RS23480 0.43 -2.4 4,899,034 - BWI76_RS23480 0.43 -2.6 4,899,034 - BWI76_RS23480 0.43 -1.7 4,899,047 + BWI76_RS23480 0.45 -1.4 4,899,069 - BWI76_RS23480 0.48 -0.4 4,899,111 + BWI76_RS23480 0.54 -1.3 4,899,111 + BWI76_RS23480 0.54 -3.4 4,899,123 + BWI76_RS23480 0.56 -2.4 4,899,125 + BWI76_RS23480 0.56 -1.4 4,899,130 + BWI76_RS23480 0.57 -1.4 4,899,130 + BWI76_RS23480 0.57 -2.9 4,899,130 + BWI76_RS23480 0.57 -1.0 4,899,130 + BWI76_RS23480 0.57 -2.2 4,899,131 - BWI76_RS23480 0.57 -1.4 4,899,137 + BWI76_RS23480 0.58 -2.0 4,899,138 - BWI76_RS23480 0.58 -0.6 4,899,142 + BWI76_RS23480 0.58 -1.4 4,899,145 - BWI76_RS23480 0.59 -2.5 4,899,150 - BWI76_RS23480 0.59 +0.7 4,899,150 - BWI76_RS23480 0.59 -0.4 4,899,278 + BWI76_RS23480 0.77 -1.4 4,899,278 + BWI76_RS23480 0.77 -2.0 4,899,283 + BWI76_RS23480 0.78 -2.2 4,899,283 + BWI76_RS23480 0.78 -1.3 4,899,284 - BWI76_RS23480 0.78 -2.4 4,899,291 - BWI76_RS23480 0.79 -2.0 4,899,299 + BWI76_RS23480 0.80 -1.6 4,899,310 - BWI76_RS23480 0.82 -1.7 4,899,336 + BWI76_RS23480 0.85 -2.5 4,899,339 + BWI76_RS23480 0.86 -1.6 4,899,339 + BWI76_RS23480 0.86 -0.7 4,899,339 + BWI76_RS23480 0.86 -3.2 4,899,347 - BWI76_RS23480 0.87 -2.1 4,899,347 - BWI76_RS23480 0.87 -1.8 4,899,347 - BWI76_RS23480 0.87 -1.7 4,899,348 + BWI76_RS23480 0.87 -2.6 4,899,350 + BWI76_RS23480 0.87 -2.7 4,899,350 + BWI76_RS23480 0.87 -1.7 4,899,356 - BWI76_RS23480 0.88 -1.5 4,899,357 - BWI76_RS23480 0.88 -0.1 4,899,358 - BWI76_RS23480 0.88 -1.2 4,899,358 - BWI76_RS23480 0.88 -3.1 4,899,371 - -2.5 4,899,375 + -1.4 4,899,388 + -1.0 4,899,394 - -1.3 4,899,394 - -1.0 4,899,398 + -1.3 4,899,399 - -2.4 4,899,403 + -2.3 4,899,403 + -1.7 4,899,403 + -2.8 4,899,406 + +0.1 4,899,408 + -2.9 4,899,411 - -2.4 4,899,411 - -1.1 4,899,416 + -3.7 4,899,416 + -2.2 4,899,416 + -1.9 4,899,416 + -1.2 4,899,416 + -0.3 4,899,416 + -1.6 4,899,416 + -1.8 4,899,416 + -0.6 4,899,424 - -1.8 4,899,424 - -2.2 4,899,424 - +0.1 4,899,474 + -0.7 4,899,486 + -0.9 4,899,494 - -1.9 4,899,494 - -0.5 4,899,494 - -0.9 4,899,496 - -1.6 4,899,502 - -1.0 4,899,512 + +0.4 4,899,520 - -2.0 4,899,531 + -1.0 4,899,531 + -1.3 4,899,531 + -0.4 4,899,531 + +0.3 4,899,531 + -1.6 4,899,531 + -1.6 4,899,536 + -0.1 4,899,539 - -0.8 4,899,539 - -1.3 4,899,539 - -1.2 4,899,539 - -0.9 4,899,539 - -2.0 4,899,539 - -0.8 4,899,539 - -0.9 4,899,565 + BWI76_RS23485 0.10 -0.5 4,899,565 + BWI76_RS23485 0.10 -0.6 4,899,565 + BWI76_RS23485 0.10 -2.0 4,899,565 + BWI76_RS23485 0.10 -0.0 4,899,566 + BWI76_RS23485 0.10 -0.6 4,899,566 + BWI76_RS23485 0.10 -1.4 4,899,573 - BWI76_RS23485 0.12 -1.9 4,899,573 - BWI76_RS23485 0.12 -2.1 4,899,573 - BWI76_RS23485 0.12 -1.2 4,899,573 - BWI76_RS23485 0.12 -1.9 4,899,573 - BWI76_RS23485 0.12 -1.3 4,899,573 - BWI76_RS23485 0.12 -0.2 4,899,573 - BWI76_RS23485 0.12 -0.2 4,899,573 - BWI76_RS23485 0.12 -0.6 4,899,608 - BWI76_RS23485 0.17 -1.6 4,899,613 + BWI76_RS23485 0.18 -2.0 4,899,638 + BWI76_RS23485 0.22 -0.3 4,899,641 - BWI76_RS23485 0.22 -0.6 4,899,675 - BWI76_RS23485 0.27 -1.5 4,899,747 - BWI76_RS23485 0.38 -0.1 4,899,766 - BWI76_RS23485 0.41 -0.6 4,899,796 - BWI76_RS23485 0.46 -0.4 4,899,806 - BWI76_RS23485 0.47 -1.7 4,900,024 + BWI76_RS23485 0.81 +0.1 4,900,092 + -0.1 4,900,095 - -0.9 4,900,095 - -0.8 4,900,095 - -1.9 4,900,133 + -0.8 4,900,185 - -1.9 4,900,194 + -1.0 4,900,217 - -0.1 4,900,255 + -0.3 4,900,278 - BWI76_RS23490 0.12 -1.0 4,900,339 + BWI76_RS23490 0.18 -0.1 4,900,405 + BWI76_RS23490 0.24 +0.0 4,900,405 + BWI76_RS23490 0.24 -0.8 4,900,405 + BWI76_RS23490 0.24 +0.1 4,900,405 + BWI76_RS23490 0.24 -0.0 4,900,405 + BWI76_RS23490 0.24 +0.0 4,900,413 - BWI76_RS23490 0.25 -0.8 4,900,413 - BWI76_RS23490 0.25 -0.9 4,900,413 - BWI76_RS23490 0.25 -0.2 4,900,413 - BWI76_RS23490 0.25 -0.1 4,900,413 - BWI76_RS23490 0.25 +2.4 4,900,465 + BWI76_RS23490 0.30 -0.3 4,900,484 - BWI76_RS23490 0.32 -0.7 4,900,588 + BWI76_RS23490 0.43 -0.2 4,900,894 - BWI76_RS23490 0.73 +0.1 4,901,047 - BWI76_RS23490 0.89 -0.7 4,901,056 + BWI76_RS23490 0.90 +0.0 4,901,085 + +0.4 4,901,124 - -0.3
Or see this region's nucleotide sequence