Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22810 and BWI76_RS22815 are separated by 124 nucleotides BWI76_RS22815 and BWI76_RS22820 are separated by 40 nucleotides
BWI76_RS22810: BWI76_RS22810 - 23S rRNA (uracil(1939)-C(5))-methyltransferase, at 4,757,086 to 4,758,429
_RS22810
BWI76_RS22815: BWI76_RS22815 - hybrid sensor histidine kinase/response regulator, at 4,758,554 to 4,761,307
_RS22815
BWI76_RS22820: BWI76_RS22820 - glycerate kinase, at 4,761,348 to 4,762,487
_RS22820
Position (kb)
4758
4759
4760
4761
4762 Strain fitness (log2 ratio)
-1
0
1 at 4757.637 kb on + strand, within BWI76_RS22810 at 4757.673 kb on + strand, within BWI76_RS22810 at 4757.689 kb on + strand, within BWI76_RS22810 at 4757.945 kb on - strand, within BWI76_RS22810 at 4758.076 kb on - strand, within BWI76_RS22810 at 4758.227 kb on + strand, within BWI76_RS22810 at 4758.227 kb on + strand, within BWI76_RS22810 at 4758.227 kb on + strand, within BWI76_RS22810 at 4758.235 kb on - strand, within BWI76_RS22810 at 4758.377 kb on + strand at 4758.377 kb on + strand at 4758.444 kb on - strand at 4758.490 kb on - strand at 4758.490 kb on - strand at 4758.520 kb on - strand at 4758.561 kb on + strand at 4758.569 kb on - strand at 4758.608 kb on + strand at 4758.672 kb on + strand at 4758.704 kb on - strand at 4758.891 kb on - strand, within BWI76_RS22815 at 4758.959 kb on - strand, within BWI76_RS22815 at 4759.116 kb on - strand, within BWI76_RS22815 at 4759.214 kb on + strand, within BWI76_RS22815 at 4759.234 kb on - strand, within BWI76_RS22815 at 4759.482 kb on - strand, within BWI76_RS22815 at 4759.595 kb on + strand, within BWI76_RS22815 at 4759.670 kb on - strand, within BWI76_RS22815 at 4759.685 kb on - strand, within BWI76_RS22815 at 4759.708 kb on - strand, within BWI76_RS22815 at 4759.713 kb on + strand, within BWI76_RS22815 at 4760.066 kb on - strand, within BWI76_RS22815 at 4760.092 kb on - strand, within BWI76_RS22815 at 4760.103 kb on + strand, within BWI76_RS22815 at 4760.126 kb on + strand, within BWI76_RS22815 at 4760.134 kb on - strand, within BWI76_RS22815 at 4760.149 kb on + strand, within BWI76_RS22815 at 4760.168 kb on - strand, within BWI76_RS22815 at 4760.330 kb on - strand, within BWI76_RS22815 at 4760.412 kb on - strand, within BWI76_RS22815 at 4760.606 kb on + strand, within BWI76_RS22815 at 4760.646 kb on + strand, within BWI76_RS22815 at 4761.020 kb on - strand, within BWI76_RS22815 at 4761.096 kb on - strand at 4761.103 kb on + strand at 4761.328 kb on - strand at 4761.435 kb on - strand at 4761.571 kb on + strand, within BWI76_RS22820 at 4761.781 kb on - strand, within BWI76_RS22820 at 4761.943 kb on + strand, within BWI76_RS22820 at 4761.978 kb on + strand, within BWI76_RS22820 at 4761.978 kb on + strand, within BWI76_RS22820 at 4761.986 kb on - strand, within BWI76_RS22820
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 4,757,637 + BWI76_RS22810 0.41 -0.5 4,757,673 + BWI76_RS22810 0.44 -0.1 4,757,689 + BWI76_RS22810 0.45 -0.2 4,757,945 - BWI76_RS22810 0.64 +0.4 4,758,076 - BWI76_RS22810 0.74 -0.1 4,758,227 + BWI76_RS22810 0.85 -0.0 4,758,227 + BWI76_RS22810 0.85 -0.4 4,758,227 + BWI76_RS22810 0.85 -0.4 4,758,235 - BWI76_RS22810 0.85 +0.1 4,758,377 + +0.1 4,758,377 + -0.7 4,758,444 - +0.8 4,758,490 - -0.4 4,758,490 - +0.4 4,758,520 - +0.5 4,758,561 + +0.7 4,758,569 - +0.1 4,758,608 + +0.8 4,758,672 + +0.4 4,758,704 - +0.6 4,758,891 - BWI76_RS22815 0.12 +0.1 4,758,959 - BWI76_RS22815 0.15 -0.4 4,759,116 - BWI76_RS22815 0.20 +0.5 4,759,214 + BWI76_RS22815 0.24 +0.5 4,759,234 - BWI76_RS22815 0.25 -0.0 4,759,482 - BWI76_RS22815 0.34 +1.1 4,759,595 + BWI76_RS22815 0.38 +1.1 4,759,670 - BWI76_RS22815 0.41 +0.1 4,759,685 - BWI76_RS22815 0.41 +0.4 4,759,708 - BWI76_RS22815 0.42 +0.8 4,759,713 + BWI76_RS22815 0.42 -0.0 4,760,066 - BWI76_RS22815 0.55 -0.0 4,760,092 - BWI76_RS22815 0.56 +1.2 4,760,103 + BWI76_RS22815 0.56 +0.1 4,760,126 + BWI76_RS22815 0.57 +0.1 4,760,134 - BWI76_RS22815 0.57 +0.4 4,760,149 + BWI76_RS22815 0.58 +0.6 4,760,168 - BWI76_RS22815 0.59 +0.1 4,760,330 - BWI76_RS22815 0.64 +0.6 4,760,412 - BWI76_RS22815 0.67 +0.5 4,760,606 + BWI76_RS22815 0.75 -0.5 4,760,646 + BWI76_RS22815 0.76 +0.3 4,761,020 - BWI76_RS22815 0.90 -0.1 4,761,096 - +0.4 4,761,103 + +0.4 4,761,328 - -0.3 4,761,435 - -0.2 4,761,571 + BWI76_RS22820 0.20 -1.5 4,761,781 - BWI76_RS22820 0.38 -0.1 4,761,943 + BWI76_RS22820 0.52 -0.1 4,761,978 + BWI76_RS22820 0.55 -0.3 4,761,978 + BWI76_RS22820 0.55 -0.0 4,761,986 - BWI76_RS22820 0.56 -0.2
Or see this region's nucleotide sequence