Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22525 and BWI76_RS22530 overlap by 4 nucleotides BWI76_RS22530 and BWI76_RS22535 overlap by 1 nucleotides
BWI76_RS22525: BWI76_RS22525 - cation efflux system protein, at 4,694,719 to 4,696,116
_RS22525
BWI76_RS22530: BWI76_RS22530 - macrolide ABC transporter permease/ATP-binding protein MacB, at 4,696,113 to 4,698,056
_RS22530
BWI76_RS22535: BWI76_RS22535 - membrane fusion protein of a type I secretion system, at 4,698,056 to 4,699,216
_RS22535
Position (kb) 4696
4697
4698
4699 Strain fitness (log2 ratio) -1
0
1 at 4695.352 kb on + strand, within BWI76_RS22525 at 4695.426 kb on + strand, within BWI76_RS22525 at 4695.610 kb on - strand, within BWI76_RS22525 at 4695.655 kb on - strand, within BWI76_RS22525 at 4695.813 kb on - strand, within BWI76_RS22525 at 4695.832 kb on + strand, within BWI76_RS22525 at 4695.864 kb on + strand, within BWI76_RS22525 at 4695.870 kb on + strand, within BWI76_RS22525 at 4695.870 kb on + strand, within BWI76_RS22525 at 4696.110 kb on - strand at 4696.246 kb on - strand at 4696.251 kb on - strand at 4696.279 kb on - strand at 4696.491 kb on - strand, within BWI76_RS22530 at 4696.530 kb on - strand, within BWI76_RS22530 at 4696.530 kb on - strand, within BWI76_RS22530 at 4696.904 kb on - strand, within BWI76_RS22530 at 4697.212 kb on + strand, within BWI76_RS22530 at 4697.371 kb on + strand, within BWI76_RS22530 at 4697.526 kb on + strand, within BWI76_RS22530 at 4697.637 kb on - strand, within BWI76_RS22530 at 4697.759 kb on - strand, within BWI76_RS22530 at 4697.800 kb on - strand, within BWI76_RS22530 at 4698.030 kb on + strand at 4698.171 kb on - strand at 4698.195 kb on + strand, within BWI76_RS22535 at 4698.260 kb on - strand, within BWI76_RS22535 at 4698.260 kb on - strand, within BWI76_RS22535 at 4698.356 kb on + strand, within BWI76_RS22535 at 4698.477 kb on - strand, within BWI76_RS22535 at 4698.536 kb on - strand, within BWI76_RS22535 at 4698.536 kb on - strand, within BWI76_RS22535 at 4698.625 kb on + strand, within BWI76_RS22535 at 4698.668 kb on - strand, within BWI76_RS22535 at 4698.671 kb on + strand, within BWI76_RS22535 at 4698.764 kb on - strand, within BWI76_RS22535 at 4698.766 kb on + strand, within BWI76_RS22535 at 4698.784 kb on + strand, within BWI76_RS22535 at 4698.784 kb on + strand, within BWI76_RS22535 at 4698.784 kb on + strand, within BWI76_RS22535 at 4698.792 kb on - strand, within BWI76_RS22535 at 4698.792 kb on - strand, within BWI76_RS22535 at 4698.826 kb on - strand, within BWI76_RS22535 at 4698.832 kb on - strand, within BWI76_RS22535 at 4698.952 kb on - strand, within BWI76_RS22535 at 4698.999 kb on + strand, within BWI76_RS22535 at 4698.999 kb on + strand, within BWI76_RS22535
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 4,695,352 + BWI76_RS22525 0.45 +0.1 4,695,426 + BWI76_RS22525 0.51 -0.5 4,695,610 - BWI76_RS22525 0.64 -0.3 4,695,655 - BWI76_RS22525 0.67 -0.5 4,695,813 - BWI76_RS22525 0.78 +0.2 4,695,832 + BWI76_RS22525 0.80 -0.1 4,695,864 + BWI76_RS22525 0.82 -0.5 4,695,870 + BWI76_RS22525 0.82 +0.0 4,695,870 + BWI76_RS22525 0.82 +0.4 4,696,110 - +0.4 4,696,246 - -0.0 4,696,251 - -0.3 4,696,279 - +0.2 4,696,491 - BWI76_RS22530 0.19 +0.2 4,696,530 - BWI76_RS22530 0.21 -0.4 4,696,530 - BWI76_RS22530 0.21 +0.4 4,696,904 - BWI76_RS22530 0.41 -0.1 4,697,212 + BWI76_RS22530 0.57 +0.1 4,697,371 + BWI76_RS22530 0.65 +0.9 4,697,526 + BWI76_RS22530 0.73 +0.0 4,697,637 - BWI76_RS22530 0.78 +0.1 4,697,759 - BWI76_RS22530 0.85 +0.8 4,697,800 - BWI76_RS22530 0.87 +0.7 4,698,030 + +0.7 4,698,171 - -0.4 4,698,195 + BWI76_RS22535 0.12 -0.6 4,698,260 - BWI76_RS22535 0.18 +0.0 4,698,260 - BWI76_RS22535 0.18 -0.3 4,698,356 + BWI76_RS22535 0.26 +0.7 4,698,477 - BWI76_RS22535 0.36 -0.4 4,698,536 - BWI76_RS22535 0.41 +0.1 4,698,536 - BWI76_RS22535 0.41 +0.4 4,698,625 + BWI76_RS22535 0.49 -0.1 4,698,668 - BWI76_RS22535 0.53 -0.3 4,698,671 + BWI76_RS22535 0.53 +0.1 4,698,764 - BWI76_RS22535 0.61 -0.0 4,698,766 + BWI76_RS22535 0.61 +0.4 4,698,784 + BWI76_RS22535 0.63 -0.3 4,698,784 + BWI76_RS22535 0.63 -0.9 4,698,784 + BWI76_RS22535 0.63 -1.1 4,698,792 - BWI76_RS22535 0.63 -0.4 4,698,792 - BWI76_RS22535 0.63 -0.2 4,698,826 - BWI76_RS22535 0.66 -0.2 4,698,832 - BWI76_RS22535 0.67 -0.7 4,698,952 - BWI76_RS22535 0.77 -0.3 4,698,999 + BWI76_RS22535 0.81 -0.3 4,698,999 + BWI76_RS22535 0.81 +1.3
Or see this region's nucleotide sequence