Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20970

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20965 and BWI76_RS20970 overlap by 4 nucleotidesBWI76_RS20970 and BWI76_RS20975 are separated by 43 nucleotides BWI76_RS20965: BWI76_RS20965 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,382,370 to 4,383,407 _RS20965 BWI76_RS20970: BWI76_RS20970 - phosphoribosylglycinamide formyltransferase, at 4,383,404 to 4,384,045 _RS20970 BWI76_RS20975: BWI76_RS20975 - hypothetical protein, at 4,384,089 to 4,385,447 _RS20975 Position (kb) 4383 4384 4385Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4382.628 kb on - strand, within BWI76_RS20965at 4382.639 kb on - strand, within BWI76_RS20965at 4383.163 kb on - strand, within BWI76_RS20965at 4383.337 kb on - strandat 4383.346 kb on - strandat 4383.379 kb on + strandat 4383.431 kb on + strandat 4383.859 kb on + strand, within BWI76_RS20970at 4384.255 kb on + strand, within BWI76_RS20975at 4384.435 kb on - strand, within BWI76_RS20975at 4384.529 kb on - strand, within BWI76_RS20975at 4384.759 kb on - strand, within BWI76_RS20975at 4384.787 kb on - strand, within BWI76_RS20975at 4384.884 kb on + strand, within BWI76_RS20975at 4384.922 kb on - strand, within BWI76_RS20975at 4384.923 kb on - strand, within BWI76_RS20975at 4384.953 kb on - strand, within BWI76_RS20975at 4384.978 kb on + strand, within BWI76_RS20975at 4384.983 kb on + strand, within BWI76_RS20975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
4,382,628 - BWI76_RS20965 0.25 -6.2
4,382,639 - BWI76_RS20965 0.26 -3.3
4,383,163 - BWI76_RS20965 0.76 -5.7
4,383,337 - -2.0
4,383,346 - -5.0
4,383,379 + -3.0
4,383,431 + -1.4
4,383,859 + BWI76_RS20970 0.71 -1.9
4,384,255 + BWI76_RS20975 0.12 +0.2
4,384,435 - BWI76_RS20975 0.25 -0.7
4,384,529 - BWI76_RS20975 0.32 -0.3
4,384,759 - BWI76_RS20975 0.49 +0.3
4,384,787 - BWI76_RS20975 0.51 -0.0
4,384,884 + BWI76_RS20975 0.58 -0.0
4,384,922 - BWI76_RS20975 0.61 +0.1
4,384,923 - BWI76_RS20975 0.61 -0.4
4,384,953 - BWI76_RS20975 0.64 +0.3
4,384,978 + BWI76_RS20975 0.65 -0.4
4,384,983 + BWI76_RS20975 0.66 +0.4

Or see this region's nucleotide sequence