Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19375

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19370 and BWI76_RS19375 are separated by 148 nucleotidesBWI76_RS19375 and BWI76_RS19380 overlap by 4 nucleotides BWI76_RS19370: BWI76_RS19370 - fructose-bisphosphate aldolase, at 4,037,528 to 4,038,580 _RS19370 BWI76_RS19375: BWI76_RS19375 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 4,038,729 to 4,039,529 _RS19375 BWI76_RS19380: BWI76_RS19380 - hydroxyethylthiazole kinase, at 4,039,526 to 4,040,299 _RS19380 Position (kb) 4038 4039 4040Strain fitness (log2 ratio) -1 0 1at 4037.820 kb on - strand, within BWI76_RS19370at 4038.028 kb on - strand, within BWI76_RS19370at 4038.091 kb on + strand, within BWI76_RS19370at 4038.126 kb on - strand, within BWI76_RS19370at 4038.128 kb on + strand, within BWI76_RS19370at 4038.197 kb on + strand, within BWI76_RS19370at 4038.347 kb on + strand, within BWI76_RS19370at 4038.407 kb on + strand, within BWI76_RS19370at 4038.413 kb on - strand, within BWI76_RS19370at 4038.645 kb on + strandat 4038.645 kb on + strandat 4038.645 kb on + strandat 4038.645 kb on + strandat 4038.653 kb on - strandat 4038.653 kb on - strandat 4038.818 kb on - strand, within BWI76_RS19375at 4038.976 kb on - strand, within BWI76_RS19375at 4039.044 kb on + strand, within BWI76_RS19375at 4039.493 kb on - strandat 4039.865 kb on + strand, within BWI76_RS19380at 4039.906 kb on - strand, within BWI76_RS19380at 4040.019 kb on + strand, within BWI76_RS19380at 4040.225 kb on + strandat 4040.298 kb on - strandat 4040.406 kb on + strandat 4040.496 kb on + strandat 4040.496 kb on + strandat 4040.504 kb on - strandat 4040.504 kb on - strandat 4040.514 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
4,037,820 - BWI76_RS19370 0.28 -0.2
4,038,028 - BWI76_RS19370 0.47 +0.1
4,038,091 + BWI76_RS19370 0.53 -0.2
4,038,126 - BWI76_RS19370 0.57 -0.8
4,038,128 + BWI76_RS19370 0.57 +0.5
4,038,197 + BWI76_RS19370 0.64 -1.3
4,038,347 + BWI76_RS19370 0.78 -0.4
4,038,407 + BWI76_RS19370 0.83 -0.1
4,038,413 - BWI76_RS19370 0.84 -0.5
4,038,645 + +0.3
4,038,645 + -0.2
4,038,645 + -0.1
4,038,645 + +0.1
4,038,653 - -0.1
4,038,653 - -0.0
4,038,818 - BWI76_RS19375 0.11 -1.1
4,038,976 - BWI76_RS19375 0.31 -0.8
4,039,044 + BWI76_RS19375 0.39 -1.0
4,039,493 - -0.1
4,039,865 + BWI76_RS19380 0.44 -0.4
4,039,906 - BWI76_RS19380 0.49 -0.3
4,040,019 + BWI76_RS19380 0.64 +0.1
4,040,225 + -0.2
4,040,298 - -0.7
4,040,406 + -0.3
4,040,496 + -0.5
4,040,496 + +0.6
4,040,504 - +0.0
4,040,504 - -1.2
4,040,514 - -0.1

Or see this region's nucleotide sequence