Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18555 and BWI76_RS18560 are separated by 194 nucleotides BWI76_RS18560 and BWI76_RS18565 are separated by 53 nucleotides BWI76_RS18565 and BWI76_RS18570 are separated by 0 nucleotides BWI76_RS18570 and BWI76_RS18575 are separated by 193 nucleotides BWI76_RS18575 and BWI76_RS18580 are separated by 4 nucleotides
BWI76_RS18555: BWI76_RS18555 - MATE family multidrug exporter, at 3,850,929 to 3,852,386
_RS18555
BWI76_RS18560: BWI76_RS18560 - tRNA-Asn, at 3,852,581 to 3,852,656
_RS18560
BWI76_RS18565: BWI76_RS18565 - pemk protein, at 3,852,710 to 3,853,043
_RS18565
BWI76_RS18570: BWI76_RS18570 - hypothetical protein, at 3,853,044 to 3,853,247
_RS18570
BWI76_RS18575: BWI76_RS18575 - transcriptional regulator, at 3,853,441 to 3,853,743
_RS18575
BWI76_RS18580: BWI76_RS18580 - hypothetical protein, at 3,853,748 to 3,854,101
_RS18580
Position (kb)
3852
3853
3854 Strain fitness (log2 ratio)
-1
0
1 at 3851.878 kb on + strand, within BWI76_RS18555 at 3851.910 kb on + strand, within BWI76_RS18555 at 3851.910 kb on + strand, within BWI76_RS18555 at 3851.918 kb on - strand, within BWI76_RS18555 at 3851.918 kb on - strand, within BWI76_RS18555 at 3851.947 kb on - strand, within BWI76_RS18555 at 3851.947 kb on - strand, within BWI76_RS18555 at 3851.955 kb on - strand, within BWI76_RS18555 at 3852.213 kb on - strand, within BWI76_RS18555 at 3852.251 kb on - strand at 3852.363 kb on + strand at 3852.381 kb on + strand at 3852.381 kb on - strand at 3852.415 kb on - strand at 3852.440 kb on + strand at 3852.505 kb on + strand at 3852.870 kb on + strand, within BWI76_RS18565 at 3852.971 kb on - strand, within BWI76_RS18565 at 3853.049 kb on - strand at 3853.231 kb on - strand at 3853.249 kb on + strand at 3853.262 kb on - strand at 3853.346 kb on + strand at 3853.379 kb on + strand at 3853.414 kb on + strand at 3853.515 kb on - strand, within BWI76_RS18575 at 3853.655 kb on - strand, within BWI76_RS18575 at 3853.776 kb on - strand at 3853.805 kb on + strand, within BWI76_RS18580
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,851,878 + BWI76_RS18555 0.65 -0.1 3,851,910 + BWI76_RS18555 0.67 -0.2 3,851,910 + BWI76_RS18555 0.67 -0.5 3,851,918 - BWI76_RS18555 0.68 +0.6 3,851,918 - BWI76_RS18555 0.68 +0.4 3,851,947 - BWI76_RS18555 0.70 +0.1 3,851,947 - BWI76_RS18555 0.70 +0.7 3,851,955 - BWI76_RS18555 0.70 +0.3 3,852,213 - BWI76_RS18555 0.88 -0.0 3,852,251 - -0.7 3,852,363 + -0.7 3,852,381 + +0.0 3,852,381 - -0.1 3,852,415 - +0.2 3,852,440 + +0.1 3,852,505 + +0.4 3,852,870 + BWI76_RS18565 0.48 +0.3 3,852,971 - BWI76_RS18565 0.78 +0.3 3,853,049 - +0.3 3,853,231 - +0.0 3,853,249 + -0.1 3,853,262 - -0.2 3,853,346 + -0.3 3,853,379 + +0.2 3,853,414 + -0.4 3,853,515 - BWI76_RS18575 0.24 +0.0 3,853,655 - BWI76_RS18575 0.71 -0.4 3,853,776 - +0.0 3,853,805 + BWI76_RS18580 0.16 +0.0
Or see this region's nucleotide sequence