Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotides BWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotides BWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotides BWI76_RS17400 and BWI76_RS17405 are separated by 150 nucleotides BWI76_RS17405 and BWI76_RS17410 are separated by 265 nucleotides
BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126
_RS17385
BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548
_RS17390
BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029
_RS17395
BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745
_RS17400
BWI76_RS17405: BWI76_RS17405 - cation transport regulator, at 3,610,896 to 3,611,126
_RS17405
BWI76_RS17410: BWI76_RS17410 - sodium-potassium/proton antiporter ChaA, at 3,611,392 to 3,612,492
_RS17410
Position (kb) 3610
3611 Strain fitness (log2 ratio) -2
-1
0
1 at 3609.104 kb on - strand at 3609.104 kb on - strand at 3609.274 kb on + strand, within BWI76_RS17390 at 3609.366 kb on + strand, within BWI76_RS17390 at 3609.702 kb on + strand at 3609.702 kb on + strand at 3609.710 kb on - strand at 3610.493 kb on - strand, within BWI76_RS17400 at 3611.016 kb on - strand, within BWI76_RS17405 at 3611.016 kb on - strand, within BWI76_RS17405 at 3611.082 kb on + strand at 3611.092 kb on + strand, within BWI76_RS17405 at 3611.427 kb on + strand at 3611.437 kb on + strand at 3611.539 kb on + strand, within BWI76_RS17410 at 3611.573 kb on + strand, within BWI76_RS17410
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,609,104 - +0.2 3,609,104 - -0.3 3,609,274 + BWI76_RS17390 0.22 +0.1 3,609,366 + BWI76_RS17390 0.48 -1.1 3,609,702 + -0.5 3,609,702 + -0.0 3,609,710 - -0.0 3,610,493 - BWI76_RS17400 0.63 -1.2 3,611,016 - BWI76_RS17405 0.52 -0.3 3,611,016 - BWI76_RS17405 0.52 -0.0 3,611,082 + -0.4 3,611,092 + BWI76_RS17405 0.85 -0.3 3,611,427 + -0.2 3,611,437 + +0.1 3,611,539 + BWI76_RS17410 0.13 -2.2 3,611,573 + BWI76_RS17410 0.16 +0.1
Or see this region's nucleotide sequence