Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17190 and BWI76_RS17195 are separated by 211 nucleotides BWI76_RS17195 and BWI76_RS17200 are separated by 58 nucleotides BWI76_RS17200 and BWI76_RS17205 are separated by 32 nucleotides BWI76_RS17205 and BWI76_RS17210 are separated by 34 nucleotides BWI76_RS17210 and BWI76_RS17215 are separated by 67 nucleotides
BWI76_RS17190: BWI76_RS17190 - TonB system transport protein TonB, at 3,562,317 to 3,563,054
_RS17190
BWI76_RS17195: BWI76_RS17195 - hypothetical protein, at 3,563,266 to 3,563,562
_RS17195
BWI76_RS17200: BWI76_RS17200 - hypothetical protein, at 3,563,621 to 3,563,905
_RS17200
BWI76_RS17205: BWI76_RS17205 - cardiolipin synthase A, at 3,563,938 to 3,565,398
_RS17205
BWI76_RS17210: BWI76_RS17210 - dsDNA-mimic protein, at 3,565,433 to 3,565,762
_RS17210
BWI76_RS17215: BWI76_RS17215 - transporter, at 3,565,830 to 3,566,667
_RS17215
Position (kb)
3563
3564
3565
3566 Strain fitness (log2 ratio)
-2
-1
0
1 at 3562.960 kb on - strand, within BWI76_RS17190 at 3562.965 kb on - strand, within BWI76_RS17190 at 3563.466 kb on + strand, within BWI76_RS17195 at 3563.639 kb on + strand at 3563.776 kb on - strand, within BWI76_RS17200 at 3563.964 kb on - strand at 3563.964 kb on - strand at 3563.978 kb on - strand at 3564.296 kb on + strand, within BWI76_RS17205 at 3564.342 kb on - strand, within BWI76_RS17205 at 3564.389 kb on - strand, within BWI76_RS17205 at 3564.598 kb on - strand, within BWI76_RS17205 at 3564.913 kb on - strand, within BWI76_RS17205 at 3565.201 kb on - strand, within BWI76_RS17205 at 3565.325 kb on + strand at 3565.400 kb on - strand at 3565.600 kb on - strand, within BWI76_RS17210 at 3565.602 kb on + strand, within BWI76_RS17210 at 3565.607 kb on - strand, within BWI76_RS17210 at 3565.629 kb on + strand, within BWI76_RS17210 at 3565.658 kb on + strand, within BWI76_RS17210 at 3565.702 kb on - strand, within BWI76_RS17210 at 3565.735 kb on - strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.740 kb on + strand at 3565.748 kb on - strand at 3565.748 kb on - strand at 3565.748 kb on - strand at 3565.748 kb on - strand at 3565.748 kb on - strand at 3565.748 kb on - strand at 3565.798 kb on - strand at 3565.841 kb on + strand at 3565.908 kb on + strand at 3565.916 kb on + strand, within BWI76_RS17215 at 3565.916 kb on + strand, within BWI76_RS17215 at 3565.936 kb on + strand, within BWI76_RS17215 at 3566.006 kb on - strand, within BWI76_RS17215 at 3566.034 kb on - strand, within BWI76_RS17215 at 3566.197 kb on + strand, within BWI76_RS17215 at 3566.198 kb on - strand, within BWI76_RS17215 at 3566.207 kb on + strand, within BWI76_RS17215 at 3566.210 kb on - strand, within BWI76_RS17215 at 3566.215 kb on - strand, within BWI76_RS17215 at 3566.220 kb on - strand, within BWI76_RS17215 at 3566.244 kb on + strand, within BWI76_RS17215 at 3566.259 kb on + strand, within BWI76_RS17215 at 3566.321 kb on - strand, within BWI76_RS17215 at 3566.323 kb on + strand, within BWI76_RS17215 at 3566.325 kb on + strand, within BWI76_RS17215 at 3566.326 kb on - strand, within BWI76_RS17215 at 3566.345 kb on + strand, within BWI76_RS17215
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,562,960 - BWI76_RS17190 0.87 -1.3 3,562,965 - BWI76_RS17190 0.88 -0.6 3,563,466 + BWI76_RS17195 0.67 -0.4 3,563,639 + +0.9 3,563,776 - BWI76_RS17200 0.54 +0.3 3,563,964 - -0.2 3,563,964 - +0.9 3,563,978 - +1.1 3,564,296 + BWI76_RS17205 0.25 +0.4 3,564,342 - BWI76_RS17205 0.28 +0.3 3,564,389 - BWI76_RS17205 0.31 +0.5 3,564,598 - BWI76_RS17205 0.45 +0.3 3,564,913 - BWI76_RS17205 0.67 +1.0 3,565,201 - BWI76_RS17205 0.86 -1.4 3,565,325 + +1.4 3,565,400 - +0.2 3,565,600 - BWI76_RS17210 0.51 -0.1 3,565,602 + BWI76_RS17210 0.51 -0.1 3,565,607 - BWI76_RS17210 0.53 -0.7 3,565,629 + BWI76_RS17210 0.59 -0.1 3,565,658 + BWI76_RS17210 0.68 +0.5 3,565,702 - BWI76_RS17210 0.82 +0.3 3,565,735 - -0.0 3,565,740 + +0.1 3,565,740 + +0.0 3,565,740 + -0.0 3,565,740 + -1.4 3,565,740 + -0.1 3,565,740 + +0.2 3,565,740 + -0.0 3,565,740 + +0.0 3,565,740 + +0.4 3,565,740 + +0.0 3,565,740 + -0.5 3,565,740 + -0.0 3,565,740 + -0.8 3,565,748 - -0.5 3,565,748 - -0.8 3,565,748 - +0.4 3,565,748 - -0.5 3,565,748 - +0.1 3,565,748 - -1.0 3,565,798 - -1.0 3,565,841 + -0.5 3,565,908 + +0.2 3,565,916 + BWI76_RS17215 0.10 -0.5 3,565,916 + BWI76_RS17215 0.10 -0.1 3,565,936 + BWI76_RS17215 0.13 -0.1 3,566,006 - BWI76_RS17215 0.21 -0.0 3,566,034 - BWI76_RS17215 0.24 -0.4 3,566,197 + BWI76_RS17215 0.44 +0.7 3,566,198 - BWI76_RS17215 0.44 -0.1 3,566,207 + BWI76_RS17215 0.45 -0.0 3,566,210 - BWI76_RS17215 0.45 -2.0 3,566,215 - BWI76_RS17215 0.46 -0.6 3,566,220 - BWI76_RS17215 0.47 +0.2 3,566,244 + BWI76_RS17215 0.49 +0.3 3,566,259 + BWI76_RS17215 0.51 +0.2 3,566,321 - BWI76_RS17215 0.59 -0.8 3,566,323 + BWI76_RS17215 0.59 -0.1 3,566,325 + BWI76_RS17215 0.59 +0.6 3,566,326 - BWI76_RS17215 0.59 -0.0 3,566,345 + BWI76_RS17215 0.61 -0.8
Or see this region's nucleotide sequence