Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16785

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16780 and BWI76_RS16785 are separated by 151 nucleotidesBWI76_RS16785 and BWI76_RS16790 are separated by 283 nucleotides BWI76_RS16780: BWI76_RS16780 - formate dehydrogenase subunit alpha, at 3,477,603 to 3,479,753 _RS16780 BWI76_RS16785: BWI76_RS16785 - peptidase M20, at 3,479,905 to 3,481,056 _RS16785 BWI76_RS16790: BWI76_RS16790 - MFS transporter, at 3,481,340 to 3,482,545 _RS16790 Position (kb) 3479 3480 3481 3482Strain fitness (log2 ratio) -1 0 1at 3478.976 kb on - strand, within BWI76_RS16780at 3479.139 kb on + strand, within BWI76_RS16780at 3479.202 kb on + strand, within BWI76_RS16780at 3479.341 kb on - strand, within BWI76_RS16780at 3479.343 kb on - strand, within BWI76_RS16780at 3479.645 kb on - strandat 3479.686 kb on - strandat 3479.715 kb on - strandat 3479.930 kb on + strandat 3480.260 kb on + strand, within BWI76_RS16785at 3480.268 kb on - strand, within BWI76_RS16785at 3480.303 kb on - strand, within BWI76_RS16785at 3480.509 kb on - strand, within BWI76_RS16785at 3480.580 kb on + strand, within BWI76_RS16785at 3481.092 kb on - strandat 3481.448 kb on - strandat 3481.739 kb on + strand, within BWI76_RS16790

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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3,478,976 - BWI76_RS16780 0.64 -0.3
3,479,139 + BWI76_RS16780 0.71 +1.0
3,479,202 + BWI76_RS16780 0.74 +0.7
3,479,341 - BWI76_RS16780 0.81 +0.2
3,479,343 - BWI76_RS16780 0.81 -0.8
3,479,645 - +0.4
3,479,686 - -0.6
3,479,715 - +0.1
3,479,930 + -0.4
3,480,260 + BWI76_RS16785 0.31 +0.4
3,480,268 - BWI76_RS16785 0.32 +0.3
3,480,303 - BWI76_RS16785 0.35 +0.4
3,480,509 - BWI76_RS16785 0.52 -0.0
3,480,580 + BWI76_RS16785 0.59 +0.5
3,481,092 - -0.4
3,481,448 - -0.5
3,481,739 + BWI76_RS16790 0.33 -0.0

Or see this region's nucleotide sequence