Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16205 and BWI76_RS16210 are separated by 343 nucleotides BWI76_RS16210 and BWI76_RS16215 overlap by 4 nucleotides BWI76_RS16215 and BWI76_RS16220 overlap by 23 nucleotides BWI76_RS16220 and BWI76_RS16225 overlap by 1 nucleotides
BWI76_RS16205: BWI76_RS16205 - NAD(P) transhydrogenase subunit alpha, at 3,362,286 to 3,363,815
_RS16205
BWI76_RS16210: BWI76_RS16210 - hypothetical protein, at 3,364,159 to 3,364,341
_RS16210
BWI76_RS16215: BWI76_RS16215 - hypothetical protein, at 3,364,338 to 3,365,288
_RS16215
BWI76_RS16220: BWI76_RS16220 - hypothetical protein, at 3,365,266 to 3,365,468
_RS16220
BWI76_RS16225: BWI76_RS16225 - arginine:ornithine antiporter, at 3,365,468 to 3,366,850
_RS16225
Position (kb)
3364
3365
3366 Strain fitness (log2 ratio)
-1
0
1 at 3363.786 kb on - strand at 3363.893 kb on + strand at 3364.072 kb on + strand at 3364.250 kb on + strand, within BWI76_RS16210 at 3364.318 kb on - strand, within BWI76_RS16210 at 3364.356 kb on + strand at 3364.364 kb on - strand at 3364.458 kb on + strand, within BWI76_RS16215 at 3364.581 kb on - strand, within BWI76_RS16215 at 3364.813 kb on + strand, within BWI76_RS16215 at 3364.835 kb on + strand, within BWI76_RS16215 at 3365.240 kb on + strand at 3365.251 kb on - strand at 3365.402 kb on - strand, within BWI76_RS16220 at 3365.522 kb on - strand at 3365.686 kb on - strand at 3365.958 kb on - strand, within BWI76_RS16225 at 3366.062 kb on - strand, within BWI76_RS16225 at 3366.087 kb on - strand, within BWI76_RS16225 at 3366.160 kb on - strand, within BWI76_RS16225
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,363,786 - -0.2 3,363,893 + +1.0 3,364,072 + -1.2 3,364,250 + BWI76_RS16210 0.50 -0.3 3,364,318 - BWI76_RS16210 0.87 -0.6 3,364,356 + +0.1 3,364,364 - +0.5 3,364,458 + BWI76_RS16215 0.13 -0.4 3,364,581 - BWI76_RS16215 0.26 +0.8 3,364,813 + BWI76_RS16215 0.50 +0.1 3,364,835 + BWI76_RS16215 0.52 +0.4 3,365,240 + -0.2 3,365,251 - +0.8 3,365,402 - BWI76_RS16220 0.67 -0.7 3,365,522 - +0.5 3,365,686 - -0.3 3,365,958 - BWI76_RS16225 0.35 +0.2 3,366,062 - BWI76_RS16225 0.43 +0.6 3,366,087 - BWI76_RS16225 0.45 -0.3 3,366,160 - BWI76_RS16225 0.50 +0.2
Or see this region's nucleotide sequence